miRNA display CGI


Results 1 - 20 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 19317 1.11 0.00197
Target:  5'- gUAUAAAUCCGCAGAGCCCGCCGCAGCg -3'
miRNA:   3'- -AUAUUUAGGCGUCUCGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 92148 0.92 0.037906
Target:  5'- ----cGUCCGCGGGGCCCGCCGaCAGCg -3'
miRNA:   3'- auauuUAGGCGUCUCGGGCGGC-GUCG- -5'
6491 3' -55 NC_001847.1 + 104712 0.84 0.117406
Target:  5'- --cAGcgCCGCgagcgcgugcgAGAGCCCGCCGCGGCg -3'
miRNA:   3'- auaUUuaGGCG-----------UCUCGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 1899 0.84 0.117406
Target:  5'- --cAGcgCCGCgagcgcgugcgAGAGCCCGCCGCGGCg -3'
miRNA:   3'- auaUUuaGGCG-----------UCUCGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 80765 0.83 0.141513
Target:  5'- ------cCCGCGGccGCCCGCCGCAGCa -3'
miRNA:   3'- auauuuaGGCGUCu-CGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 65717 0.82 0.161425
Target:  5'- cGUucAUCC-CAGAGCCCGCCGgGGCg -3'
miRNA:   3'- aUAuuUAGGcGUCUCGGGCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 114268 0.82 0.161425
Target:  5'- ----cGUCCGCccaguauaaAGAGCgCCGCCGCAGCg -3'
miRNA:   3'- auauuUAGGCG---------UCUCG-GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 30756 0.8 0.214292
Target:  5'- cGUAGA-CCGC--GGCCCGCUGCAGCg -3'
miRNA:   3'- aUAUUUaGGCGucUCGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 45265 0.8 0.219772
Target:  5'- cGUGAGcgCgGCGaAGCCCGCCGCGGCg -3'
miRNA:   3'- aUAUUUa-GgCGUcUCGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 27983 0.8 0.219772
Target:  5'- cGUGGcgCCGCGcuGGGCCgCGCUGCAGCg -3'
miRNA:   3'- aUAUUuaGGCGU--CUCGG-GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 31934 0.8 0.229364
Target:  5'- -----cUCCGCGgcggguaagcggacGAGCCUGCCGCGGCg -3'
miRNA:   3'- auauuuAGGCGU--------------CUCGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 104904 0.8 0.236935
Target:  5'- ------cCCGCGGGGCCCGC-GCGGCg -3'
miRNA:   3'- auauuuaGGCGUCUCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 29522 0.8 0.236935
Target:  5'- ------gCCGCAGAGCUCGCCcgcGCGGCg -3'
miRNA:   3'- auauuuaGGCGUCUCGGGCGG---CGUCG- -5'
6491 3' -55 NC_001847.1 + 2091 0.8 0.236935
Target:  5'- ------cCCGCGGGGCCCGC-GCGGCg -3'
miRNA:   3'- auauuuaGGCGUCUCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 3098 0.79 0.268018
Target:  5'- ------gCCGCGGccggcaggccgcGGCCCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUC------------UCGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 105911 0.79 0.268018
Target:  5'- ------gCCGCGGccggcaggccgcGGCCCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUC------------UCGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 101911 0.78 0.295192
Target:  5'- --aGGcgCCGCGGcGCCCGgCGCGGCg -3'
miRNA:   3'- auaUUuaGGCGUCuCGGGCgGCGUCG- -5'
6491 3' -55 NC_001847.1 + 34135 0.78 0.295192
Target:  5'- ------gCCGCGGuGgCCGCCGCGGCg -3'
miRNA:   3'- auauuuaGGCGUCuCgGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 58733 0.78 0.295192
Target:  5'- ------gCCGCGGGGugccCCCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUCUC----GGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 103179 0.77 0.316948
Target:  5'- ----cGUCCaCGGGGCCCGCCGCcGCc -3'
miRNA:   3'- auauuUAGGcGUCUCGGGCGGCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.