Results 1 - 20 of 627 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6491 | 3' | -55 | NC_001847.1 | + | 131445 | 0.74 | 0.462042 |
Target: 5'- ------gCCGCGGGGCCCGCgGCcGUg -3' miRNA: 3'- auauuuaGGCGUCUCGGGCGgCGuCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 100540 | 0.76 | 0.35584 |
Target: 5'- aGUGGGUgggCGgGGAGCCgGCCGCGGCg -3' miRNA: 3'- aUAUUUAg--GCgUCUCGGgCGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 115791 | 0.76 | 0.372311 |
Target: 5'- ----cGUUCGCGGAG-CCGCUGCGGCu -3' miRNA: 3'- auauuUAGGCGUCUCgGGCGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 103918 | 0.76 | 0.380738 |
Target: 5'- ------gCCGCGGgcGGCgCCGCCGCGGCc -3' miRNA: 3'- auauuuaGGCGUC--UCG-GGCGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 13133 | 0.75 | 0.406773 |
Target: 5'- --cGGcgCCGCGccGCCUGCCGCGGCc -3' miRNA: 3'- auaUUuaGGCGUcuCGGGCGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 2600 | 0.75 | 0.424738 |
Target: 5'- ------gCCGCAcgcGAGCCCGCCGC-GCc -3' miRNA: 3'- auauuuaGGCGU---CUCGGGCGGCGuCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 112740 | 0.75 | 0.432976 |
Target: 5'- ------cCCGCGGAcgagcacGCUCGCCGCGGCc -3' miRNA: 3'- auauuuaGGCGUCU-------CGGGCGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 50053 | 0.75 | 0.433897 |
Target: 5'- gGUGGcggCCGCGG-GUCCGCgCGCGGCg -3' miRNA: 3'- aUAUUua-GGCGUCuCGGGCG-GCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 109755 | 0.74 | 0.452552 |
Target: 5'- aGUGcuUCCGCGGucccccuccGCCCGCCGCcGCc -3' miRNA: 3'- aUAUuuAGGCGUCu--------CGGGCGGCGuCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 30306 | 0.77 | 0.33989 |
Target: 5'- gUGUGAAgCUGCGGAcGCCCGCCcccccgGCGGCg -3' miRNA: 3'- -AUAUUUaGGCGUCU-CGGGCGG------CGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 34135 | 0.78 | 0.295192 |
Target: 5'- ------gCCGCGGuGgCCGCCGCGGCg -3' miRNA: 3'- auauuuaGGCGUCuCgGGCGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 105911 | 0.79 | 0.268018 |
Target: 5'- ------gCCGCGGccggcaggccgcGGCCCGCCGCGGCc -3' miRNA: 3'- auauuuaGGCGUC------------UCGGGCGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 104712 | 0.84 | 0.117406 |
Target: 5'- --cAGcgCCGCgagcgcgugcgAGAGCCCGCCGCGGCg -3' miRNA: 3'- auaUUuaGGCG-----------UCUCGGGCGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 65717 | 0.82 | 0.161425 |
Target: 5'- cGUucAUCC-CAGAGCCCGCCGgGGCg -3' miRNA: 3'- aUAuuUAGGcGUCUCGGGCGGCgUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 30756 | 0.8 | 0.214292 |
Target: 5'- cGUAGA-CCGC--GGCCCGCUGCAGCg -3' miRNA: 3'- aUAUUUaGGCGucUCGGGCGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 45265 | 0.8 | 0.219772 |
Target: 5'- cGUGAGcgCgGCGaAGCCCGCCGCGGCg -3' miRNA: 3'- aUAUUUa-GgCGUcUCGGGCGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 27983 | 0.8 | 0.219772 |
Target: 5'- cGUGGcgCCGCGcuGGGCCgCGCUGCAGCg -3' miRNA: 3'- aUAUUuaGGCGU--CUCGG-GCGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 31934 | 0.8 | 0.229364 |
Target: 5'- -----cUCCGCGgcggguaagcggacGAGCCUGCCGCGGCg -3' miRNA: 3'- auauuuAGGCGU--------------CUCGGGCGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 29522 | 0.8 | 0.236935 |
Target: 5'- ------gCCGCAGAGCUCGCCcgcGCGGCg -3' miRNA: 3'- auauuuaGGCGUCUCGGGCGG---CGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 104904 | 0.8 | 0.236935 |
Target: 5'- ------cCCGCGGGGCCCGC-GCGGCg -3' miRNA: 3'- auauuuaGGCGUCUCGGGCGgCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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