miRNA display CGI


Results 1 - 20 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 58064 0.65 0.913534
Target:  5'- ------gCCGCcGAuuggcgcgcgcGCgCGCCGCAGCg -3'
miRNA:   3'- auauuuaGGCGuCU-----------CGgGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 3206 0.66 0.907352
Target:  5'- ---cGGUCCGCc-AGCUCGC-GCAGCc -3'
miRNA:   3'- auauUUAGGCGucUCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 51863 0.66 0.906721
Target:  5'- --gGAggCCGCAGGugugcgccucugcGCCCGCCccGCcGCg -3'
miRNA:   3'- auaUUuaGGCGUCU-------------CGGGCGG--CGuCG- -5'
6491 3' -55 NC_001847.1 + 19317 1.11 0.00197
Target:  5'- gUAUAAAUCCGCAGAGCCCGCCGCAGCg -3'
miRNA:   3'- -AUAUUUAGGCGUCUCGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 39770 0.65 0.913534
Target:  5'- --cAGAgCCgGCGGcgcGGUCCGCCGcCAGCc -3'
miRNA:   3'- auaUUUaGG-CGUC---UCGGGCGGC-GUCG- -5'
6491 3' -55 NC_001847.1 + 30020 0.65 0.913534
Target:  5'- ------cCCGCgugcuGGGGCCCauGCCGCccGGCg -3'
miRNA:   3'- auauuuaGGCG-----UCUCGGG--CGGCG--UCG- -5'
6491 3' -55 NC_001847.1 + 128162 0.65 0.913534
Target:  5'- ----uAUCUGCuGggcGGCCCGCCG-GGCg -3'
miRNA:   3'- auauuUAGGCGuC---UCGGGCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 62914 0.65 0.913534
Target:  5'- --cGGGUgCuCGGGGCCCGCgGgCGGCu -3'
miRNA:   3'- auaUUUAgGcGUCUCGGGCGgC-GUCG- -5'
6491 3' -55 NC_001847.1 + 51973 0.66 0.907352
Target:  5'- ----cGUCCGCc-AGCCCGUCG-GGCg -3'
miRNA:   3'- auauuUAGGCGucUCGGGCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 12560 0.66 0.907352
Target:  5'- --cAGGUgCGCAacGGGCgCCGCguaCGCGGCg -3'
miRNA:   3'- auaUUUAgGCGU--CUCG-GGCG---GCGUCG- -5'
6491 3' -55 NC_001847.1 + 58262 0.66 0.907352
Target:  5'- -----cUCCGuCAGgcaGGCCUccaugugcucgGCCGCGGCg -3'
miRNA:   3'- auauuuAGGC-GUC---UCGGG-----------CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 55311 0.66 0.907352
Target:  5'- --aGAcgCCGCGGucGCCCacuuCCgGCAGCg -3'
miRNA:   3'- auaUUuaGGCGUCu-CGGGc---GG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 121192 0.65 0.913534
Target:  5'- ------cUCGCcacGGGCCgcaGCCGCAGCu -3'
miRNA:   3'- auauuuaGGCGu--CUCGGg--CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 51909 0.66 0.907352
Target:  5'- ------gCCGCc--GCCCcgGCCGCGGCg -3'
miRNA:   3'- auauuuaGGCGucuCGGG--CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 105906 0.65 0.913534
Target:  5'- ------gCCGCGGGGCCaUGCaGUGGCg -3'
miRNA:   3'- auauuuaGGCGUCUCGG-GCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 99266 0.66 0.907352
Target:  5'- ------gCCGCcGAcuccaGCugCCGCCGCAGCg -3'
miRNA:   3'- auauuuaGGCGuCU-----CG--GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 38076 0.66 0.907352
Target:  5'- -------gCGCGGcGgCCGCCGCGGUc -3'
miRNA:   3'- auauuuagGCGUCuCgGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 72661 0.66 0.906721
Target:  5'- ------cCCGCGGccGCCCGCCGgcgacccCGGCc -3'
miRNA:   3'- auauuuaGGCGUCu-CGGGCGGC-------GUCG- -5'
6491 3' -55 NC_001847.1 + 42004 0.65 0.913534
Target:  5'- ------cCCGCGGGGggCGCCgGCAGCc -3'
miRNA:   3'- auauuuaGGCGUCUCggGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 14358 0.65 0.913534
Target:  5'- ------cCUGCGGGGaaCGCCGcCAGCg -3'
miRNA:   3'- auauuuaGGCGUCUCggGCGGC-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.