miRNA display CGI


Results 61 - 80 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 117354 0.66 0.900922
Target:  5'- ------cCCGCuGGGGCCCGUCcugaaccuaGCGGCc -3'
miRNA:   3'- auauuuaGGCG-UCUCGGGCGG---------CGUCG- -5'
6491 3' -55 NC_001847.1 + 106053 0.66 0.900922
Target:  5'- ------cCCGCGccGuGCUCGCCgGCGGCa -3'
miRNA:   3'- auauuuaGGCGU--CuCGGGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 15529 0.66 0.900922
Target:  5'- --gGGAgCCGCGGGcuGCUggCGCCGguGCg -3'
miRNA:   3'- auaUUUaGGCGUCU--CGG--GCGGCguCG- -5'
6491 3' -55 NC_001847.1 + 115815 0.66 0.900266
Target:  5'- ------gCCGCGGcgcuugcguuaacAGCCacgGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUC-------------UCGGg--CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 92718 0.66 0.900266
Target:  5'- ------cUgGCAGAGCCuCGCgugcucgCGCAGCg -3'
miRNA:   3'- auauuuaGgCGUCUCGG-GCG-------GCGUCG- -5'
6491 3' -55 NC_001847.1 + 30922 0.66 0.896946
Target:  5'- ------aCCGCGGuGCCCGugccccgcgcgaguaCCgGCAGCg -3'
miRNA:   3'- auauuuaGGCGUCuCGGGC---------------GG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 83580 0.66 0.894246
Target:  5'- gGUAGGcgcCCGC-GAGCCCGagcaCGCGcGCg -3'
miRNA:   3'- aUAUUUa--GGCGuCUCGGGCg---GCGU-CG- -5'
6491 3' -55 NC_001847.1 + 99900 0.66 0.894246
Target:  5'- -----cUCCGCcgcGcGCCCGCCggccgccuGCAGCa -3'
miRNA:   3'- auauuuAGGCGu--CuCGGGCGG--------CGUCG- -5'
6491 3' -55 NC_001847.1 + 81300 0.66 0.894246
Target:  5'- --cAGcgCCGCc-AGCgCCGCCGCuGCc -3'
miRNA:   3'- auaUUuaGGCGucUCG-GGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 117038 0.66 0.894246
Target:  5'- ------gCCGCGGAG-CUGCUGgAGCa -3'
miRNA:   3'- auauuuaGGCGUCUCgGGCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 114758 0.66 0.894246
Target:  5'- ------aCCGguGAGCCa-CCGCgAGCg -3'
miRNA:   3'- auauuuaGGCguCUCGGgcGGCG-UCG- -5'
6491 3' -55 NC_001847.1 + 107194 0.66 0.894246
Target:  5'- ------aCCGC-GAGCgcgcgCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGuCUCGg----GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 70749 0.66 0.894246
Target:  5'- aAUAGcgCCGCgcAGAGCgggCGCCGCAu- -3'
miRNA:   3'- aUAUUuaGGCG--UCUCGg--GCGGCGUcg -5'
6491 3' -55 NC_001847.1 + 92398 0.66 0.894246
Target:  5'- -cUGGAUCUGCuGuccGcCCCGCCGCccGCg -3'
miRNA:   3'- auAUUUAGGCGuCu--C-GGGCGGCGu-CG- -5'
6491 3' -55 NC_001847.1 + 6679 0.66 0.894246
Target:  5'- -cUAGG-CCGCGGcGGCCgGCCG-GGCg -3'
miRNA:   3'- auAUUUaGGCGUC-UCGGgCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 78509 0.66 0.894246
Target:  5'- uUGUAGcgCuCGCGGuagacgcGCUCGaCCGCGGCc -3'
miRNA:   3'- -AUAUUuaG-GCGUCu------CGGGC-GGCGUCG- -5'
6491 3' -55 NC_001847.1 + 39512 0.66 0.894246
Target:  5'- ------cCCGCgccAGAgcgGCCCGCCaCAGCg -3'
miRNA:   3'- auauuuaGGCG---UCU---CGGGCGGcGUCG- -5'
6491 3' -55 NC_001847.1 + 101415 0.66 0.894246
Target:  5'- --gGGGUCuCGUcu--CCCGCCGCGGCu -3'
miRNA:   3'- auaUUUAG-GCGucucGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 18456 0.66 0.894246
Target:  5'- -------gUGCGGuGCCgCGCCcGCAGCg -3'
miRNA:   3'- auauuuagGCGUCuCGG-GCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 7287 0.66 0.894246
Target:  5'- -----cUCCGCAguacGAGCCgcUGgCGCGGCg -3'
miRNA:   3'- auauuuAGGCGU----CUCGG--GCgGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.