miRNA display CGI


Results 41 - 60 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 6942 0.68 0.832541
Target:  5'- aGUGcuUCCGCGGucccccuccGCCCuGCCGCcGCc -3'
miRNA:   3'- aUAUuuAGGCGUCu--------CGGG-CGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 7287 0.66 0.894246
Target:  5'- -----cUCCGCAguacGAGCCgcUGgCGCGGCg -3'
miRNA:   3'- auauuuAGGCGU----CUCGG--GCgGCGUCG- -5'
6491 3' -55 NC_001847.1 + 7386 0.7 0.718523
Target:  5'- ------cCUGCcGGGCaagCCGCCGCAGCu -3'
miRNA:   3'- auauuuaGGCGuCUCG---GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 7810 0.71 0.624655
Target:  5'- ------gCCGCGGcAGCCgGCCGCcucGGCg -3'
miRNA:   3'- auauuuaGGCGUC-UCGGgCGGCG---UCG- -5'
6491 3' -55 NC_001847.1 + 7902 0.68 0.796841
Target:  5'- -------gCGCGGGGCgCGCgGCGGCc -3'
miRNA:   3'- auauuuagGCGUCUCGgGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 8067 0.74 0.462042
Target:  5'- ------cCCGCgcgcagaggGGGGCaCCGCCGCGGCg -3'
miRNA:   3'- auauuuaGGCG---------UCUCG-GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 8589 0.71 0.624655
Target:  5'- gGUGGuuagCCGCGcGAGCgucaGCCGCAGCg -3'
miRNA:   3'- aUAUUua--GGCGU-CUCGgg--CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 9557 0.71 0.666705
Target:  5'- --cAGcgCUGCAGccguccAGCCCGCCGCccGCg -3'
miRNA:   3'- auaUUuaGGCGUC------UCGGGCGGCGu-CG- -5'
6491 3' -55 NC_001847.1 + 9618 0.72 0.603632
Target:  5'- ------aCCGUAGcugcGCCCGCCGCcGCg -3'
miRNA:   3'- auauuuaGGCGUCu---CGGGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 9810 0.7 0.728692
Target:  5'- ----uGUCCcgGCAGAccggcccgGCCCGCCGCcGCc -3'
miRNA:   3'- auauuUAGG--CGUCU--------CGGGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 9927 0.75 0.432976
Target:  5'- ------cCCGCGGAcgagcacGCUCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUCU-------CGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 10067 0.65 0.913534
Target:  5'- ------gCCGCGcGGGCCCagcgccccGCCGCGcGCg -3'
miRNA:   3'- auauuuaGGCGU-CUCGGG--------CGGCGU-CG- -5'
6491 3' -55 NC_001847.1 + 10124 0.7 0.687588
Target:  5'- -----cUUCGCGGcgagcgGGCCCgGCCGUAGCg -3'
miRNA:   3'- auauuuAGGCGUC------UCGGG-CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 10879 0.67 0.841005
Target:  5'- --gGGcgCCcagGCAGAccGCCUGCgGCAGCu -3'
miRNA:   3'- auaUUuaGG---CGUCU--CGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 11235 0.65 0.913534
Target:  5'- gGUGGAggagCCGCcguuuucgGGaAGCuuGCCGCGGg -3'
miRNA:   3'- aUAUUUa---GGCG--------UC-UCGggCGGCGUCg -5'
6491 3' -55 NC_001847.1 + 11628 0.7 0.718523
Target:  5'- --------aGCcGAGCCCGCgGCAGCc -3'
miRNA:   3'- auauuuaggCGuCUCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 11673 0.71 0.645703
Target:  5'- ------cCCaGCcGAGCCCGCgGCGGCc -3'
miRNA:   3'- auauuuaGG-CGuCUCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 11967 0.66 0.887328
Target:  5'- gAUGGG-CgGCuGAGCgCCGCCGC-GCc -3'
miRNA:   3'- aUAUUUaGgCGuCUCG-GGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 12074 0.72 0.582697
Target:  5'- --cGAggCCGCGGAGCgCCGCggguccggcgccCGCGGCc -3'
miRNA:   3'- auaUUuaGGCGUCUCG-GGCG------------GCGUCG- -5'
6491 3' -55 NC_001847.1 + 12352 0.67 0.849268
Target:  5'- --cGAGUCagCGCcccaccGGAGCCUGCUGgAGCg -3'
miRNA:   3'- auaUUUAG--GCG------UCUCGGGCGGCgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.