miRNA display CGI


Results 21 - 40 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 83909 0.78 0.117157
Target:  5'- cGGCCgGCAGCGGCgcgcCCGCGAGCagggcccGCUCg -3'
miRNA:   3'- cUCGG-CGUCGCCGa---GGCGCUUG-------CGAG- -5'
6491 5' -61.5 NC_001847.1 + 19449 0.78 0.120195
Target:  5'- cGGGCCGCAGcCGGCUcucgcccCCGCGcAGcCGCUCa -3'
miRNA:   3'- -CUCGGCGUC-GCCGA-------GGCGC-UU-GCGAG- -5'
6491 5' -61.5 NC_001847.1 + 39177 0.77 0.130085
Target:  5'- -cGCgGCAGCGGCUgCUGCGcucACGCUCg -3'
miRNA:   3'- cuCGgCGUCGCCGA-GGCGCu--UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 31960 0.77 0.130085
Target:  5'- -uGCCGCGGCGGCggcgggccCCGUGGACGC-Cg -3'
miRNA:   3'- cuCGGCGUCGCCGa-------GGCGCUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 68223 0.77 0.133432
Target:  5'- cGGGCCGCGGCGGggCCGCaagcACGCUUg -3'
miRNA:   3'- -CUCGGCGUCGCCgaGGCGcu--UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 34134 0.77 0.136858
Target:  5'- -uGCCGCGGUGGCcgCCGCGGcgagcGCGCUg -3'
miRNA:   3'- cuCGGCGUCGCCGa-GGCGCU-----UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 83761 0.77 0.136858
Target:  5'- -cGCCGCGaccGCGGcCUCCGCGAGCGUc- -3'
miRNA:   3'- cuCGGCGU---CGCC-GAGGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 102089 0.76 0.171508
Target:  5'- -uGCCGCAGCGcCUcggCCGCGAGCGCg- -3'
miRNA:   3'- cuCGGCGUCGCcGA---GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 68829 0.76 0.171508
Target:  5'- -cGCCGCAG-GGCgCCGCGAAgaGCUCg -3'
miRNA:   3'- cuCGGCGUCgCCGaGGCGCUUg-CGAG- -5'
6491 5' -61.5 NC_001847.1 + 104600 0.76 0.167301
Target:  5'- gGAGCCGCGcGaCGaGCUCgGCGAcgucGCGCUCg -3'
miRNA:   3'- -CUCGGCGU-C-GC-CGAGgCGCU----UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 31919 0.76 0.166885
Target:  5'- cGGCCGCGgccGCGGCUCCGCGGcggguaaGCGgaCg -3'
miRNA:   3'- cUCGGCGU---CGCCGAGGCGCU-------UGCgaG- -5'
6491 5' -61.5 NC_001847.1 + 68790 0.76 0.171508
Target:  5'- -cGCCGCGGCGGC-CgCGCGAGCGggCc -3'
miRNA:   3'- cuCGGCGUCGCCGaG-GCGCUUGCgaG- -5'
6491 5' -61.5 NC_001847.1 + 101012 0.76 0.159164
Target:  5'- -cGCCGCGGCGGCcaCCGCGGcagGCGC-Cg -3'
miRNA:   3'- cuCGGCGUCGCCGa-GGCGCU---UGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 97098 0.75 0.1847
Target:  5'- uAGCCGCGGCGGCgcgguuggCCGCGAgaaacuGCGUg- -3'
miRNA:   3'- cUCGGCGUCGCCGa-------GGCGCU------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 56623 0.75 0.189292
Target:  5'- aGGCCGCGGuCGaGCgcgucuaCCGCGAGCGCUa -3'
miRNA:   3'- cUCGGCGUC-GC-CGa------GGCGCUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 6681 0.75 0.175809
Target:  5'- aGGCCGCGGCGGCcggCCGgGcGCGCg- -3'
miRNA:   3'- cUCGGCGUCGCCGa--GGCgCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 29520 0.75 0.193985
Target:  5'- cGGCCGCAGa-GCUCgcccgcgcggCGCGGGCGCUCg -3'
miRNA:   3'- cUCGGCGUCgcCGAG----------GCGCUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 125212 0.75 0.198295
Target:  5'- cGGGCCGCGGCGaGCgugcucgUCCGCGGGgGCg- -3'
miRNA:   3'- -CUCGGCGUCGC-CG-------AGGCGCUUgCGag -5'
6491 5' -61.5 NC_001847.1 + 33630 0.75 0.198779
Target:  5'- cGGgCGCGGCGGCUgaCCGCGAgGCGCg- -3'
miRNA:   3'- cUCgGCGUCGCCGA--GGCGCU-UGCGag -5'
6491 5' -61.5 NC_001847.1 + 81441 0.75 0.198779
Target:  5'- cGAGCCGcCGGCGGCgcgCuCGCGcGCGCa- -3'
miRNA:   3'- -CUCGGC-GUCGCCGa--G-GCGCuUGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.