miRNA display CGI


Results 21 - 40 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 2374 0.71 0.354943
Target:  5'- cGGCgGCGGCGGCUuuUCGCcGGCGcCUCg -3'
miRNA:   3'- cUCGgCGUCGCCGA--GGCGcUUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 2448 0.74 0.213785
Target:  5'- cAGCCGCAGCGaGCUCCcgauCGAGCGggCg -3'
miRNA:   3'- cUCGGCGUCGC-CGAGGc---GCUUGCgaG- -5'
6491 5' -61.5 NC_001847.1 + 2589 0.67 0.559124
Target:  5'- cGGCCGCcGCGGCcgCaCGCGAgcccgccGCGC-Cg -3'
miRNA:   3'- cUCGGCGuCGCCGa-G-GCGCU-------UGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 2666 0.66 0.579914
Target:  5'- -cGCC-CGGCGGCUCgGCcGGCaucgGCUCg -3'
miRNA:   3'- cuCGGcGUCGCCGAGgCGcUUG----CGAG- -5'
6491 5' -61.5 NC_001847.1 + 2783 0.7 0.386749
Target:  5'- --cCCGcCGGCGGCcuccagggCCGCGAGCGCg- -3'
miRNA:   3'- cucGGC-GUCGCCGa-------GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 2984 0.72 0.297025
Target:  5'- -cGCCGgGGcCGGCgcuggagCCGCGcGCGCUCc -3'
miRNA:   3'- cuCGGCgUC-GCCGa------GGCGCuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 3026 0.72 0.310785
Target:  5'- cGGGCCGCgccgAGCaGCUCgGCGGcccggagcacGCGCUCc -3'
miRNA:   3'- -CUCGGCG----UCGcCGAGgCGCU----------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 3096 0.69 0.411804
Target:  5'- aGGCCGCGGcCGGCaggCCGCGGccCGC-Cg -3'
miRNA:   3'- cUCGGCGUC-GCCGa--GGCGCUu-GCGaG- -5'
6491 5' -61.5 NC_001847.1 + 3141 0.68 0.511535
Target:  5'- gGAGCC-CGGCGGCgCCGgCG-GCGCg- -3'
miRNA:   3'- -CUCGGcGUCGCCGaGGC-GCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 3288 0.69 0.455712
Target:  5'- cGAGCacgGCGcGCaGCUCgGCGAGCGCg- -3'
miRNA:   3'- -CUCGg--CGU-CGcCGAGgCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 3496 0.73 0.258593
Target:  5'- cGGCgGCAGCGGCgCCGUc-ACGCUCc -3'
miRNA:   3'- cUCGgCGUCGCCGaGGCGcuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 3526 0.7 0.394988
Target:  5'- cGGGCCGUGGCcGacuacggCCGCGAGCGCg- -3'
miRNA:   3'- -CUCGGCGUCGcCga-----GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 3580 0.71 0.339746
Target:  5'- cAGCUGCAGguccgGGC-CCGCGAgcuucGCGCUCu -3'
miRNA:   3'- cUCGGCGUCg----CCGaGGCGCU-----UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 3705 0.72 0.277278
Target:  5'- cGGCCGCGggccccGCGGCcgCCGCGuAGCGCg- -3'
miRNA:   3'- cUCGGCGU------CGCCGa-GGCGC-UUGCGag -5'
6491 5' -61.5 NC_001847.1 + 3809 0.66 0.599862
Target:  5'- -uGCCgGCAcGgGGCgucggCCGCGAGCGUg- -3'
miRNA:   3'- cuCGG-CGU-CgCCGa----GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 3813 0.69 0.455712
Target:  5'- cGGGCgGCGGCGGCgcgCUGcCGGgccACGcCUCg -3'
miRNA:   3'- -CUCGgCGUCGCCGa--GGC-GCU---UGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 3874 0.69 0.455712
Target:  5'- cAGCgGCGGCGGCccgUCGCGcGGCGC-Cg -3'
miRNA:   3'- cUCGgCGUCGCCGa--GGCGC-UUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 3898 0.73 0.246716
Target:  5'- cGAGCCGUugcgcGCGGUggCGCGGACGCa- -3'
miRNA:   3'- -CUCGGCGu----CGCCGagGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 3935 0.66 0.579914
Target:  5'- -cGCUgGCAGCGGg-CgGCGAGCGCg- -3'
miRNA:   3'- cuCGG-CGUCGCCgaGgCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 3944 0.66 0.619901
Target:  5'- -cGCCGCGGCGGggggggcgccguCUCCggcgGCGAGgGCg- -3'
miRNA:   3'- cuCGGCGUCGCC------------GAGG----CGCUUgCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.