miRNA display CGI


Results 1 - 20 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 485 0.66 0.609873
Target:  5'- cAGCgGCGGCGGCggggcggCCGC--GCGC-Ca -3'
miRNA:   3'- cUCGgCGUCGCCGa------GGCGcuUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 614 0.67 0.521121
Target:  5'- --uCCGCAGCGGCg-CGCGGcccGCGcCUCc -3'
miRNA:   3'- cucGGCGUCGCCGagGCGCU---UGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 671 0.66 0.589873
Target:  5'- aGAGCCGCAcuCGGa-CCGCGugUGUUCg -3'
miRNA:   3'- -CUCGGCGUc-GCCgaGGCGCuuGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 994 0.71 0.347285
Target:  5'- -cGCCGCGGCGGCg--GCacGCGCUCc -3'
miRNA:   3'- cuCGGCGUCGCCGaggCGcuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 1021 0.67 0.560109
Target:  5'- aGGCCGCcgcccGCGGCgcgCCGCagcagcacGAGCGuCUCc -3'
miRNA:   3'- cUCGGCGu----CGCCGa--GGCG--------CUUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 1103 0.7 0.394988
Target:  5'- cGGCCGCgGGCGGCgccgCCGCGG-C-CUCc -3'
miRNA:   3'- cUCGGCG-UCGCCGa---GGCGCUuGcGAG- -5'
6491 5' -61.5 NC_001847.1 + 1191 0.66 0.639976
Target:  5'- -cGCCGCGGcCGGCagcUCGuCGGGCGC-Ca -3'
miRNA:   3'- cuCGGCGUC-GCCGa--GGC-GCUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 1254 0.7 0.390031
Target:  5'- cGGCCGCAGCGGCgcgccgagcCCccagcgguuggcggcGCGGugGCUg -3'
miRNA:   3'- cUCGGCGUCGCCGa--------GG---------------CGCUugCGAg -5'
6491 5' -61.5 NC_001847.1 + 1484 0.74 0.229753
Target:  5'- aGAGCCGCAGCGGCggcgCCuCGGgguagagccGCGCg- -3'
miRNA:   3'- -CUCGGCGUCGCCGa---GGcGCU---------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 1624 0.7 0.370613
Target:  5'- -cGCCGCGGCaGCaCCGCGGcGCGCa- -3'
miRNA:   3'- cuCGGCGUCGcCGaGGCGCU-UGCGag -5'
6491 5' -61.5 NC_001847.1 + 1881 0.67 0.550277
Target:  5'- cAGCaGCAGcCGGUUgcccagcgCCGCGAGCGCg- -3'
miRNA:   3'- cUCGgCGUC-GCCGA--------GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 1919 0.74 0.229753
Target:  5'- aGAGCCcgccgcggcGCGGCGGCcacucgggCCGCcGGCGCUCg -3'
miRNA:   3'- -CUCGG---------CGUCGCCGa-------GGCGcUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 1967 0.66 0.609873
Target:  5'- -cGCCG-GGCGGCgCCGCcAGCGcCUCc -3'
miRNA:   3'- cuCGGCgUCGCCGaGGCGcUUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 2067 0.78 0.114484
Target:  5'- -cGCCGCAGCGGUggCgGCGAGCGCc- -3'
miRNA:   3'- cuCGGCGUCGCCGa-GgCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 2096 0.75 0.198779
Target:  5'- gGGGCCcgcGCGGCGGCgggCCGCGAucucggccaGCGcCUCg -3'
miRNA:   3'- -CUCGG---CGUCGCCGa--GGCGCU---------UGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 2184 0.7 0.394988
Target:  5'- -cGCCGCcugGGCGGCg-UGCGGGCGCa- -3'
miRNA:   3'- cuCGGCG---UCGCCGagGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 2191 0.69 0.455712
Target:  5'- cGAGCCGCgccgcgaccucggGGCGGCaguaggccgccagcgCCGCG-GCGCUg -3'
miRNA:   3'- -CUCGGCG-------------UCGCCGa--------------GGCGCuUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 2287 0.67 0.521121
Target:  5'- -cGCCGuCGGCGGCggggCCGcCGGGCGg-- -3'
miRNA:   3'- cuCGGC-GUCGCCGa---GGC-GCUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 2335 0.69 0.446726
Target:  5'- cGGGCaGCGGCGGCUCcCGCc-GCGC-Cg -3'
miRNA:   3'- -CUCGgCGUCGCCGAG-GCGcuUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 2357 0.72 0.276638
Target:  5'- cGGGCCGCAugagguccagucGCGcGC-CCGCGAagacggcggugacGCGCUCg -3'
miRNA:   3'- -CUCGGCGU------------CGC-CGaGGCGCU-------------UGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.