miRNA display CGI


Results 1 - 20 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 44829 0.66 0.579914
Target:  5'- cGGCCcCGGCGGCcCCacCGAacgcGCGCUCg -3'
miRNA:   3'- cUCGGcGUCGCCGaGGc-GCU----UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 7417 0.66 0.588876
Target:  5'- cGGCaCGCGGCGGCUugccaaggcgcagUCGCuAGCGCg- -3'
miRNA:   3'- cUCG-GCGUCGCCGA-------------GGCGcUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 48196 0.66 0.589873
Target:  5'- -uGCCGCgccGGCGGCcagggCCGagGAGCGCa- -3'
miRNA:   3'- cuCGGCG---UCGCCGa----GGCg-CUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 17712 0.66 0.583893
Target:  5'- -cGCCGCAgugcacguacaGCGGCUCgGCguacGAggcggccacggccucGCGCUCg -3'
miRNA:   3'- cuCGGCGU-----------CGCCGAGgCG----CU---------------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 89121 0.66 0.579914
Target:  5'- -cGCCGCcccGGUGGUcgUGCGcGCGCUCg -3'
miRNA:   3'- cuCGGCG---UCGCCGagGCGCuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 118985 0.66 0.588876
Target:  5'- cGAG-CGCGGCGGCg-UGCGAcaugcugGCGCUg -3'
miRNA:   3'- -CUCgGCGUCGCCGagGCGCU-------UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 2666 0.66 0.579914
Target:  5'- -cGCC-CGGCGGCUCgGCcGGCaucgGCUCg -3'
miRNA:   3'- cuCGGcGUCGCCGAGgCGcUUG----CGAG- -5'
6491 5' -61.5 NC_001847.1 + 3935 0.66 0.579914
Target:  5'- -cGCUgGCAGCGGg-CgGCGAGCGCg- -3'
miRNA:   3'- cuCGG-CGUCGCCgaGgCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 134082 0.66 0.589873
Target:  5'- uGGGaCGCGGaccagGGC-CCGCGGgagACGCUCg -3'
miRNA:   3'- -CUCgGCGUCg----CCGaGGCGCU---UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 101079 0.66 0.579914
Target:  5'- -cGCCGCGGgGGCcgggUCgGCGGggcgggcgggcGCGUUCg -3'
miRNA:   3'- cuCGGCGUCgCCG----AGgCGCU-----------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 35623 0.66 0.579914
Target:  5'- -cGCCGcCGGCGGCgCUGgGGccaGCGCUg -3'
miRNA:   3'- cuCGGC-GUCGCCGaGGCgCU---UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 12458 0.66 0.589873
Target:  5'- -cGCgCGCGGCGGagcCUCCGCGGcuucccGCGUg- -3'
miRNA:   3'- cuCG-GCGUCGCC---GAGGCGCU------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 5162 0.66 0.588876
Target:  5'- cGGGCCaggcaucgGCGGCGauuucggggaacaGCgCCGCGAGCGCg- -3'
miRNA:   3'- -CUCGG--------CGUCGC-------------CGaGGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 69264 0.66 0.579914
Target:  5'- -cGCgGCuGGCGGCggCCGCGGGCuucCUCu -3'
miRNA:   3'- cuCGgCG-UCGCCGa-GGCGCUUGc--GAG- -5'
6491 5' -61.5 NC_001847.1 + 17088 0.66 0.589873
Target:  5'- cAGCCGCguaaaAGCGGCgcUCCauGUuAGCGCUCu -3'
miRNA:   3'- cUCGGCG-----UCGCCG--AGG--CGcUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 33174 0.66 0.579914
Target:  5'- -cGCUGCAGCGGCuggccggcUCUGCGcccgacuuggcGGCGCg- -3'
miRNA:   3'- cuCGGCGUCGCCG--------AGGCGC-----------UUGCGag -5'
6491 5' -61.5 NC_001847.1 + 106757 0.66 0.579914
Target:  5'- -cGCCGCGGCGGggggggcgccguCUCCggcGCGAGgGCg- -3'
miRNA:   3'- cuCGGCGUCGCC------------GAGG---CGCUUgCGag -5'
6491 5' -61.5 NC_001847.1 + 72038 0.66 0.579914
Target:  5'- -cGCgGCGGCGGCcCCG-GGGCGUa- -3'
miRNA:   3'- cuCGgCGUCGCCGaGGCgCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 81845 0.66 0.589873
Target:  5'- -cGCCGCacuGGCGGCgaucgaGCGcGCGUUCg -3'
miRNA:   3'- cuCGGCG---UCGCCGagg---CGCuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 103484 0.66 0.589873
Target:  5'- aGAGCCGCAcuCGGa-CCGCGugUGUUCg -3'
miRNA:   3'- -CUCGGCGUc-GCCgaGGCGCuuGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.