miRNA display CGI


Results 1 - 20 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 13476 0.75 0.180206
Target:  5'- cGGGCCGCaccccacagcGGCGGCcuUCCGCGAaguGCGCg- -3'
miRNA:   3'- -CUCGGCG----------UCGCCG--AGGCGCU---UGCGag -5'
6491 5' -61.5 NC_001847.1 + 34134 0.77 0.136858
Target:  5'- -uGCCGCGGUGGCcgCCGCGGcgagcGCGCUg -3'
miRNA:   3'- cuCGGCGUCGCCGa-GGCGCU-----UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 31919 0.76 0.166885
Target:  5'- cGGCCGCGgccGCGGCUCCGCGGcggguaaGCGgaCg -3'
miRNA:   3'- cUCGGCGU---CGCCGAGGCGCU-------UGCgaG- -5'
6491 5' -61.5 NC_001847.1 + 68790 0.76 0.171508
Target:  5'- -cGCCGCGGCGGC-CgCGCGAGCGggCc -3'
miRNA:   3'- cuCGGCGUCGCCGaG-GCGCUUGCgaG- -5'
6491 5' -61.5 NC_001847.1 + 6681 0.75 0.175809
Target:  5'- aGGCCGCGGCGGCcggCCGgGcGCGCg- -3'
miRNA:   3'- cUCGGCGUCGCCGa--GGCgCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 27518 0.75 0.180206
Target:  5'- -cGCCGCGGCGGCggCGgGGACGCcCg -3'
miRNA:   3'- cuCGGCGUCGCCGagGCgCUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 54377 0.75 0.180206
Target:  5'- cGAGCUGCuGCGGCgggcggCCGCGGGCGaggCg -3'
miRNA:   3'- -CUCGGCGuCGCCGa-----GGCGCUUGCga-G- -5'
6491 5' -61.5 NC_001847.1 + 62130 0.75 0.180206
Target:  5'- -uGCCGCGGCcuGGUUCCGCGcccGCGCUg -3'
miRNA:   3'- cuCGGCGUCG--CCGAGGCGCu--UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 90245 0.75 0.180206
Target:  5'- -cGCCGCcGCGGC-CUGUGAcGCGCUCg -3'
miRNA:   3'- cuCGGCGuCGCCGaGGCGCU-UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 68223 0.77 0.133432
Target:  5'- cGGGCCGCGGCGGggCCGCaagcACGCUUg -3'
miRNA:   3'- -CUCGGCGUCGCCgaGGCGcu--UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 31960 0.77 0.130085
Target:  5'- -uGCCGCGGCGGCggcgggccCCGUGGACGC-Cg -3'
miRNA:   3'- cuCGGCGUCGCCGa-------GGCGCUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 39177 0.77 0.130085
Target:  5'- -cGCgGCAGCGGCUgCUGCGcucACGCUCg -3'
miRNA:   3'- cuCGgCGUCGCCGA-GGCGCu--UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 53010 0.82 0.064528
Target:  5'- gGAGCCGaCAGCGGCggCCGCuGcGCGCUCg -3'
miRNA:   3'- -CUCGGC-GUCGCCGa-GGCG-CuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 86117 0.8 0.086121
Target:  5'- -cGCUGCacgAGCGGCUCCGCGAcgcgGCGCUg -3'
miRNA:   3'- cuCGGCG---UCGCCGAGGCGCU----UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 131830 0.79 0.095564
Target:  5'- cGGCgGCAGCGGCgcCCGCGccGCGCUCg -3'
miRNA:   3'- cUCGgCGUCGCCGa-GGCGCu-UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 133234 0.78 0.111581
Target:  5'- -cGCCGCGGCgGGCUCuCGCacGCGCUCg -3'
miRNA:   3'- cuCGGCGUCG-CCGAG-GCGcuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 134038 0.78 0.111581
Target:  5'- aGGCCGCGGCGGCgccgcCCGCGGcCGCg- -3'
miRNA:   3'- cUCGGCGUCGCCGa----GGCGCUuGCGag -5'
6491 5' -61.5 NC_001847.1 + 104880 0.78 0.114484
Target:  5'- -cGCCGCAGCGGUggCgGCGAGCGCc- -3'
miRNA:   3'- cuCGGCGUCGCCGa-GgCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 83909 0.78 0.117157
Target:  5'- cGGCCgGCAGCGGCgcgcCCGCGAGCagggcccGCUCg -3'
miRNA:   3'- cUCGG-CGUCGCCGa---GGCGCUUG-------CGAG- -5'
6491 5' -61.5 NC_001847.1 + 19449 0.78 0.120195
Target:  5'- cGGGCCGCAGcCGGCUcucgcccCCGCGcAGcCGCUCa -3'
miRNA:   3'- -CUCGGCGUC-GCCGA-------GGCGC-UU-GCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.