miRNA display CGI


Results 1 - 20 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 104885 0.66 0.639976
Target:  5'- -cGCCGCGGCGcGCUgcaacgccgCCaGCGAcACGCg- -3'
miRNA:   3'- cuCGGCGUCGC-CGA---------GG-CGCU-UGCGag -5'
6491 5' -61.5 NC_001847.1 + 3944 0.66 0.619901
Target:  5'- -cGCCGCGGCGGggggggcgccguCUCCggcgGCGAGgGCg- -3'
miRNA:   3'- cuCGGCGUCGCC------------GAGG----CGCUUgCGag -5'
6491 5' -61.5 NC_001847.1 + 97001 0.66 0.619901
Target:  5'- aGAGCgGguCGGCGGCgcuggCCGCGGggggcaGCGCg- -3'
miRNA:   3'- -CUCGgC--GUCGCCGa----GGCGCU------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 19353 1.08 0.000824
Target:  5'- gGAGCCGCAGCGGCUCCGCGAACGCUCu -3'
miRNA:   3'- -CUCGGCGUCGCCGAGGCGCUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 60478 0.66 0.639976
Target:  5'- -uGCCGCGGCucggccGGCUCCagGCGcAGCaGCUg -3'
miRNA:   3'- cuCGGCGUCG------CCGAGG--CGC-UUG-CGAg -5'
6491 5' -61.5 NC_001847.1 + 58457 0.66 0.639976
Target:  5'- cAGCCGCAGCG---CCGCGcGCGUg- -3'
miRNA:   3'- cUCGGCGUCGCcgaGGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 32194 0.66 0.639976
Target:  5'- cGGCCGgGGCccgaGGC-CCGCGGGCGg-- -3'
miRNA:   3'- cUCGGCgUCG----CCGaGGCGCUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 80152 0.66 0.639976
Target:  5'- -cGCgGUguuuGGCGGCUgCGCGAaguugugcGCGCUg -3'
miRNA:   3'- cuCGgCG----UCGCCGAgGCGCU--------UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 49246 0.66 0.629938
Target:  5'- -cGgCGgGGUGGCgCCgGCGAacGCGCUCg -3'
miRNA:   3'- cuCgGCgUCGCCGaGG-CGCU--UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 66057 0.66 0.619901
Target:  5'- -cGuCCGCGcGCGGCgccagacgCgGCGAGCGCg- -3'
miRNA:   3'- cuC-GGCGU-CGCCGa-------GgCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 52914 0.66 0.629938
Target:  5'- -cGCgGgCAGCGGCUcggggcgcCCGCGAAgGC-Cg -3'
miRNA:   3'- cuCGgC-GUCGCCGA--------GGCGCUUgCGaG- -5'
6491 5' -61.5 NC_001847.1 + 107993 0.66 0.629938
Target:  5'- uGGCCGCcGCGGCUgCGCcccccGGACGg-- -3'
miRNA:   3'- cUCGGCGuCGCCGAgGCG-----CUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 41387 0.66 0.639976
Target:  5'- cGGGCCGCcGcCGGCagCCGCGcGGC-CUCc -3'
miRNA:   3'- -CUCGGCGuC-GCCGa-GGCGC-UUGcGAG- -5'
6491 5' -61.5 NC_001847.1 + 116250 0.66 0.629938
Target:  5'- uGGCgGUAcGCGGCgCUGCGGAcucuggcgcCGCUCg -3'
miRNA:   3'- cUCGgCGU-CGCCGaGGCGCUU---------GCGAG- -5'
6491 5' -61.5 NC_001847.1 + 1191 0.66 0.639976
Target:  5'- -cGCCGCGGcCGGCagcUCGuCGGGCGC-Ca -3'
miRNA:   3'- cuCGGCGUC-GCCGa--GGC-GCUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 92977 0.66 0.629938
Target:  5'- cGGGCgGgCGGCGuGCagccacaCGCGAGCGCUg -3'
miRNA:   3'- -CUCGgC-GUCGC-CGag-----GCGCUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 34080 0.66 0.628934
Target:  5'- --cCCGCGGCGGCcccggggccggccUCgGCGggUGCg- -3'
miRNA:   3'- cucGGCGUCGCCG-------------AGgCGCuuGCGag -5'
6491 5' -61.5 NC_001847.1 + 101623 0.66 0.619901
Target:  5'- -cGCC-CGGCGcCUCCGCGGcgGCGCcCg -3'
miRNA:   3'- cuCGGcGUCGCcGAGGCGCU--UGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 132601 0.66 0.639976
Target:  5'- cAGCCcgccggagaGCAGCGGUcCCGCGGcccggcagcaaaGCGCg- -3'
miRNA:   3'- cUCGG---------CGUCGCCGaGGCGCU------------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 48478 0.66 0.639976
Target:  5'- aAGCgCGCGGCGaGCUCCGagaaGAGCa--- -3'
miRNA:   3'- cUCG-GCGUCGC-CGAGGCg---CUUGcgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.