miRNA display CGI


Results 1 - 20 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 19353 1.08 0.000824
Target:  5'- gGAGCCGCAGCGGCUCCGCGAACGCUCu -3'
miRNA:   3'- -CUCGGCGUCGCCGAGGCGCUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 115798 0.88 0.022144
Target:  5'- gGAGCCGCuGCGGCUCCGCGcgcuGCGCUg -3'
miRNA:   3'- -CUCGGCGuCGCCGAGGCGCu---UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 44909 0.87 0.027397
Target:  5'- cAGCCGCGGCGGCggCCGCGAccgugucgcugggGCGCUCg -3'
miRNA:   3'- cUCGGCGUCGCCGa-GGCGCU-------------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 98781 0.84 0.045705
Target:  5'- cGGGCCGCGGCGGCgCCGCGuGGCGCg- -3'
miRNA:   3'- -CUCGGCGUCGCCGaGGCGC-UUGCGag -5'
6491 5' -61.5 NC_001847.1 + 42905 0.82 0.05961
Target:  5'- cGAGCUGCAGCGGCUCgagaGCGcGCGCUg -3'
miRNA:   3'- -CUCGGCGUCGCCGAGg---CGCuUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 13218 0.82 0.05961
Target:  5'- cGGGCCGCucGGCGaGCUCCGCGAugGC-Ca -3'
miRNA:   3'- -CUCGGCG--UCGC-CGAGGCGCUugCGaG- -5'
6491 5' -61.5 NC_001847.1 + 53010 0.82 0.064528
Target:  5'- gGAGCCGaCAGCGGCggCCGCuGcGCGCUCg -3'
miRNA:   3'- -CUCGGC-GUCGCCGa-GGCG-CuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 86117 0.8 0.086121
Target:  5'- -cGCUGCacgAGCGGCUCCGCGAcgcgGCGCUg -3'
miRNA:   3'- cuCGGCG---UCGCCGAGGCGCU----UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 29017 0.79 0.095564
Target:  5'- cGGCgGCAGCGGCgcCCGCGccGCGCUCg -3'
miRNA:   3'- cUCGgCGUCGCCGa-GGCGCu-UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 131830 0.79 0.095564
Target:  5'- cGGCgGCAGCGGCgcCCGCGccGCGCUCg -3'
miRNA:   3'- cUCGgCGUCGCCGa-GGCGCu-UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 133234 0.78 0.111581
Target:  5'- -cGCCGCGGCgGGCUCuCGCacGCGCUCg -3'
miRNA:   3'- cuCGGCGUCG-CCGAG-GCGcuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 30421 0.78 0.111581
Target:  5'- -cGCCGCGGCgGGCUCuCGCacGCGCUCg -3'
miRNA:   3'- cuCGGCGUCG-CCGAG-GCGcuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 134038 0.78 0.111581
Target:  5'- aGGCCGCGGCGGCgccgcCCGCGGcCGCg- -3'
miRNA:   3'- cUCGGCGUCGCCGa----GGCGCUuGCGag -5'
6491 5' -61.5 NC_001847.1 + 31225 0.78 0.111581
Target:  5'- aGGCCGCGGCGGCgccgcCCGCGGcCGCg- -3'
miRNA:   3'- cUCGGCGUCGCCGa----GGCGCUuGCGag -5'
6491 5' -61.5 NC_001847.1 + 104880 0.78 0.114484
Target:  5'- -cGCCGCAGCGGUggCgGCGAGCGCc- -3'
miRNA:   3'- cuCGGCGUCGCCGa-GgCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 89875 0.78 0.114484
Target:  5'- -cGCCGCGGCgGGCUUCGCc-GCGCUCa -3'
miRNA:   3'- cuCGGCGUCG-CCGAGGCGcuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 2067 0.78 0.114484
Target:  5'- -cGCCGCAGCGGUggCgGCGAGCGCc- -3'
miRNA:   3'- cuCGGCGUCGCCGa-GgCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 83909 0.78 0.117157
Target:  5'- cGGCCgGCAGCGGCgcgcCCGCGAGCagggcccGCUCg -3'
miRNA:   3'- cUCGG-CGUCGCCGa---GGCGCUUG-------CGAG- -5'
6491 5' -61.5 NC_001847.1 + 128782 0.78 0.117458
Target:  5'- -uGCCGCAGCGGCUacgcCCGCG-GCGCg- -3'
miRNA:   3'- cuCGGCGUCGCCGA----GGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 19449 0.78 0.120195
Target:  5'- cGGGCCGCAGcCGGCUcucgcccCCGCGcAGcCGCUCa -3'
miRNA:   3'- -CUCGGCGUC-GCCGA-------GGCGC-UU-GCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.