miRNA display CGI


Results 1 - 20 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 135130 0.68 0.502022
Target:  5'- gGGGUCGCAgGgGGC-CCGCGcGGCGCg- -3'
miRNA:   3'- -CUCGGCGU-CgCCGaGGCGC-UUGCGag -5'
6491 5' -61.5 NC_001847.1 + 135007 0.66 0.639976
Target:  5'- cGGCCGgGGCccgaGGC-CCGCGGGCGg-- -3'
miRNA:   3'- cUCGGCgUCG----CCGaGGCGCUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 134256 0.71 0.317846
Target:  5'- cGGCCGCGGCGGCcCCggcGCGGGcCGC-Cg -3'
miRNA:   3'- cUCGGCGUCGCCGaGG---CGCUU-GCGaG- -5'
6491 5' -61.5 NC_001847.1 + 134116 0.71 0.325026
Target:  5'- -uGCUGCuGCGGCgcgCCGCGGGCGg-- -3'
miRNA:   3'- cuCGGCGuCGCCGa--GGCGCUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 134082 0.66 0.589873
Target:  5'- uGGGaCGCGGaccagGGC-CCGCGGgagACGCUCg -3'
miRNA:   3'- -CUCgGCGUCg----CCGaGGCGCU---UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 134038 0.78 0.111581
Target:  5'- aGGCCGCGGCGGCgccgcCCGCGGcCGCg- -3'
miRNA:   3'- cUCGGCGUCGCCGa----GGCGCUuGCGag -5'
6491 5' -61.5 NC_001847.1 + 133966 0.73 0.240949
Target:  5'- cGGCCGCGGCGGUggccuUCUGCGcggccGCGCUg -3'
miRNA:   3'- cUCGGCGUCGCCG-----AGGCGCu----UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 133670 0.73 0.240949
Target:  5'- -cGCCGCuGCGGCUcugCCGCGGcggcaacguGCGCUa -3'
miRNA:   3'- cuCGGCGuCGCCGA---GGCGCU---------UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 133524 0.66 0.589873
Target:  5'- -cGCCGCGGU-GCUgCCGCG-GCGCa- -3'
miRNA:   3'- cuCGGCGUCGcCGA-GGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 133234 0.78 0.111581
Target:  5'- -cGCCGCGGCgGGCUCuCGCacGCGCUCg -3'
miRNA:   3'- cuCGGCGUCG-CCGAG-GCGcuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 133057 0.73 0.258593
Target:  5'- -cGCCGC-GCgGGCcCCGCGgGGCGCUCg -3'
miRNA:   3'- cuCGGCGuCG-CCGaGGCGC-UUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 132968 0.67 0.550277
Target:  5'- -cGCCGCccaGGCggCGCGGGCGCUg -3'
miRNA:   3'- cuCGGCGucgCCGagGCGCUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 132959 0.69 0.446726
Target:  5'- aGGUCGCGgcGCGGCU-CGCGGAccaccCGCUCu -3'
miRNA:   3'- cUCGGCGU--CGCCGAgGCGCUU-----GCGAG- -5'
6491 5' -61.5 NC_001847.1 + 132870 0.68 0.511535
Target:  5'- -cGCCGaCGGCGGCUuccgCCGCGugcCGCcCg -3'
miRNA:   3'- cuCGGC-GUCGCCGA----GGCGCuu-GCGaG- -5'
6491 5' -61.5 NC_001847.1 + 132704 0.68 0.464794
Target:  5'- gGAGCuCGCuGCGGCUggCGCGAA-GCUUg -3'
miRNA:   3'- -CUCG-GCGuCGCCGAg-GCGCUUgCGAG- -5'
6491 5' -61.5 NC_001847.1 + 132672 0.67 0.540497
Target:  5'- cGGCgGCGGgGGCgccgCCGCc--CGCUCg -3'
miRNA:   3'- cUCGgCGUCgCCGa---GGCGcuuGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 132601 0.66 0.639976
Target:  5'- cAGCCcgccggagaGCAGCGGUcCCGCGGcccggcagcaaaGCGCg- -3'
miRNA:   3'- cUCGG---------CGUCGCCGaGGCGCU------------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 132565 0.72 0.277278
Target:  5'- cGGCCGCGGCGGC-CgCGCaGGCGCcCg -3'
miRNA:   3'- cUCGGCGUCGCCGaG-GCGcUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 132296 0.7 0.403341
Target:  5'- cGAGUCGCAGCGGCaUgGCGGACc--- -3'
miRNA:   3'- -CUCGGCGUCGCCGaGgCGCUUGcgag -5'
6491 5' -61.5 NC_001847.1 + 132271 0.7 0.403341
Target:  5'- -cGgCGCGGCGGC-CCGCGcgucggccugGGCGCUg -3'
miRNA:   3'- cuCgGCGUCGCCGaGGCGC----------UUGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.