miRNA display CGI


Results 61 - 80 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 111076 0.66 0.618898
Target:  5'- -uGCCGCGGgccugggccCGGCUgCGCGAgaaggucGCGCg- -3'
miRNA:   3'- cuCGGCGUC---------GCCGAgGCGCU-------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 61298 0.66 0.618898
Target:  5'- --aCCGCGGCGGCguuuuuaUgCGCGggUGCg- -3'
miRNA:   3'- cucGGCGUCGCCG-------AgGCGCuuGCGag -5'
6491 5' -61.5 NC_001847.1 + 38159 0.66 0.616892
Target:  5'- -cGCCGCcccgagggaccggaAGCGGCcguacCCGCGAACGa-- -3'
miRNA:   3'- cuCGGCG--------------UCGCCGa----GGCGCUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 67067 0.66 0.613883
Target:  5'- -cGCCGCGGCguucgccccgccgcaGGCgcgCCGCGAGgcCGC-Cg -3'
miRNA:   3'- cuCGGCGUCG---------------CCGa--GGCGCUU--GCGaG- -5'
6491 5' -61.5 NC_001847.1 + 73217 0.66 0.613883
Target:  5'- -cGCCGCugacgcggaggagggGgGCGGCggCGCGGgcGCGCUCg -3'
miRNA:   3'- cuCGGCG---------------U-CGCCGagGCGCU--UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 119105 0.66 0.610875
Target:  5'- -cGCCGCggGGCGGCggggcaggcauggggCCGuCGAugGCg- -3'
miRNA:   3'- cuCGGCG--UCGCCGa--------------GGC-GCUugCGag -5'
6491 5' -61.5 NC_001847.1 + 103298 0.66 0.609873
Target:  5'- cAGCgGCGGCGGCggggcggCCGC--GCGC-Ca -3'
miRNA:   3'- cUCGgCGUCGCCGa------GGCGcuUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 44381 0.66 0.609873
Target:  5'- -cGCCGC-GCaGGCguUCCGCG-ACGCg- -3'
miRNA:   3'- cuCGGCGuCG-CCG--AGGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 67462 0.66 0.609873
Target:  5'- cAGCgCGCGcGCGGCggCCGCG-GCGUcgUCg -3'
miRNA:   3'- cUCG-GCGU-CGCCGa-GGCGCuUGCG--AG- -5'
6491 5' -61.5 NC_001847.1 + 104534 0.66 0.609873
Target:  5'- cGGCgcugCGCGGCGGCcCCGgGGcCGCUa -3'
miRNA:   3'- cUCG----GCGUCGCCGaGGCgCUuGCGAg -5'
6491 5' -61.5 NC_001847.1 + 68446 0.66 0.609873
Target:  5'- cGGCCGCAGaGG-UCCGCGccCGCg- -3'
miRNA:   3'- cUCGGCGUCgCCgAGGCGCuuGCGag -5'
6491 5' -61.5 NC_001847.1 + 97187 0.66 0.609873
Target:  5'- -cGCUGCguAGCGGCUugcUCGCGAucaGCGC-Cg -3'
miRNA:   3'- cuCGGCG--UCGCCGA---GGCGCU---UGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 47566 0.66 0.609873
Target:  5'- gGAGCC-CGGCGGC--CGCGcACGCg- -3'
miRNA:   3'- -CUCGGcGUCGCCGagGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 96014 0.66 0.609873
Target:  5'- cGAGCCcCAGCgcggcgcgucGGCcgCCGCGuuGCGCUa -3'
miRNA:   3'- -CUCGGcGUCG----------CCGa-GGCGCu-UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 31805 0.66 0.609873
Target:  5'- cGGCCGUGGCGGUgggcggCGCGGGgGCa- -3'
miRNA:   3'- cUCGGCGUCGCCGag----GCGCUUgCGag -5'
6491 5' -61.5 NC_001847.1 + 35891 0.66 0.609873
Target:  5'- gGAGUCgGCGGCGGCggCGUGGgacgGCGCg- -3'
miRNA:   3'- -CUCGG-CGUCGCCGagGCGCU----UGCGag -5'
6491 5' -61.5 NC_001847.1 + 33844 0.66 0.609873
Target:  5'- gGAGUCGCGGCGGgagagaCCGCGGGCu--- -3'
miRNA:   3'- -CUCGGCGUCGCCga----GGCGCUUGcgag -5'
6491 5' -61.5 NC_001847.1 + 91625 0.66 0.609873
Target:  5'- cGGCUGCGGCuGCggCUGCGGcuGCgGCUCu -3'
miRNA:   3'- cUCGGCGUCGcCGa-GGCGCU--UG-CGAG- -5'
6491 5' -61.5 NC_001847.1 + 35548 0.66 0.609873
Target:  5'- uGGCUGCcgaGGCGGCgcgcgaCCGCGAcgaggGCGC-Cg -3'
miRNA:   3'- cUCGGCG---UCGCCGa-----GGCGCU-----UGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 6765 0.66 0.609873
Target:  5'- cGGCCGguGCGaggcgccagcuGCUCCGUGGccaccagcaGCGCg- -3'
miRNA:   3'- cUCGGCguCGC-----------CGAGGCGCU---------UGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.