miRNA display CGI


Results 41 - 60 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 3944 0.66 0.619901
Target:  5'- -cGCCGCGGCGGggggggcgccguCUCCggcgGCGAGgGCg- -3'
miRNA:   3'- cuCGGCGUCGCC------------GAGG----CGCUUgCGag -5'
6491 5' -61.5 NC_001847.1 + 93746 0.66 0.619901
Target:  5'- uAGaCCGCgcgguccgggAGCGGCUgaGCGAgcgugacguGCGCUCu -3'
miRNA:   3'- cUC-GGCG----------UCGCCGAggCGCU---------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 101623 0.66 0.619901
Target:  5'- -cGCC-CGGCGcCUCCGCGGcgGCGCcCg -3'
miRNA:   3'- cuCGGcGUCGCcGAGGCGCU--UGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 99413 0.66 0.619901
Target:  5'- aAGCCGCAggguacGCGGUagCCGCauACGCUg -3'
miRNA:   3'- cUCGGCGU------CGCCGa-GGCGcuUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 97001 0.66 0.619901
Target:  5'- aGAGCgGguCGGCGGCgcuggCCGCGGggggcaGCGCg- -3'
miRNA:   3'- -CUCGgC--GUCGCCGa----GGCGCU------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 33064 0.66 0.619901
Target:  5'- cGGGUCGCGcGCGGC-CCGCGccUGCc- -3'
miRNA:   3'- -CUCGGCGU-CGCCGaGGCGCuuGCGag -5'
6491 5' -61.5 NC_001847.1 + 11654 0.66 0.619901
Target:  5'- gGAGCCuuccgGCGGCGGUgaaGgGGGCGCUg -3'
miRNA:   3'- -CUCGG-----CGUCGCCGaggCgCUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 84031 0.66 0.619901
Target:  5'- uGGUCGaCGGCGaGCUCgcgCGCGAGuCGCUa -3'
miRNA:   3'- cUCGGC-GUCGC-CGAG---GCGCUU-GCGAg -5'
6491 5' -61.5 NC_001847.1 + 14560 0.66 0.619901
Target:  5'- -cGCCGCAGCgcgGGUgCUGgCGGGCGCg- -3'
miRNA:   3'- cuCGGCGUCG---CCGaGGC-GCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 49400 0.66 0.619901
Target:  5'- -uGCCGUcauGGCgGGCUCCGCGcAGC-CUg -3'
miRNA:   3'- cuCGGCG---UCG-CCGAGGCGC-UUGcGAg -5'
6491 5' -61.5 NC_001847.1 + 10570 0.66 0.619901
Target:  5'- cGGGCCcggcgcCGGCGGCccccCCGCGcGCGCg- -3'
miRNA:   3'- -CUCGGc-----GUCGCCGa---GGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 39115 0.66 0.619901
Target:  5'- uAGCgcaaCGCGGCGGCcgacgcgCCGCGcuGGgGCUCg -3'
miRNA:   3'- cUCG----GCGUCGCCGa------GGCGC--UUgCGAG- -5'
6491 5' -61.5 NC_001847.1 + 113383 0.66 0.619901
Target:  5'- cGGGCCcggcgcCGGCGGCccccCCGCGcGCGCg- -3'
miRNA:   3'- -CUCGGc-----GUCGCCGa---GGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 104780 0.66 0.619901
Target:  5'- -cGCCG-GGCGGC-CCGCcAGCGcCUCc -3'
miRNA:   3'- cuCGGCgUCGCCGaGGCGcUUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 40198 0.66 0.619901
Target:  5'- cGGCCGCcgauGCGGU--CGUGGGCGuCUCg -3'
miRNA:   3'- cUCGGCGu---CGCCGagGCGCUUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 15929 0.66 0.619901
Target:  5'- -cGCCGCcccGCGGUggCCGCG-GCGC-Cg -3'
miRNA:   3'- cuCGGCGu--CGCCGa-GGCGCuUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 76597 0.66 0.619901
Target:  5'- -cGCCGCuggcGGCGGCgaagaCCGCGGcgGC-CUCu -3'
miRNA:   3'- cuCGGCG----UCGCCGa----GGCGCU--UGcGAG- -5'
6491 5' -61.5 NC_001847.1 + 9635 0.66 0.619901
Target:  5'- -cGCCGCGcCGGC-CCGC---CGCUCg -3'
miRNA:   3'- cuCGGCGUcGCCGaGGCGcuuGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 9518 0.66 0.619901
Target:  5'- cGAGCCGagcgGGCGGCgcgcuagcgUCCGUGcgugcgccAGCGCUg -3'
miRNA:   3'- -CUCGGCg---UCGCCG---------AGGCGC--------UUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 19250 0.66 0.619901
Target:  5'- cGAGCCGgccaAGCGGCgcgagCCGgCG-GCGCa- -3'
miRNA:   3'- -CUCGGCg---UCGCCGa----GGC-GCuUGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.