miRNA display CGI


Results 21 - 40 of 707 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 16355 0.66 0.629938
Target:  5'- gGAGgCGCuGGCGGCUgCCG-GugcCGCUCa -3'
miRNA:   3'- -CUCgGCG-UCGCCGA-GGCgCuu-GCGAG- -5'
6491 5' -61.5 NC_001847.1 + 75784 0.66 0.629938
Target:  5'- cGGCCGCG--GGCUCgGCGcGGCGCg- -3'
miRNA:   3'- cUCGGCGUcgCCGAGgCGC-UUGCGag -5'
6491 5' -61.5 NC_001847.1 + 72920 0.66 0.629938
Target:  5'- aGGCgGuCGGCGGCgUCGgGuuuACGCUCa -3'
miRNA:   3'- cUCGgC-GUCGCCGaGGCgCu--UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 49246 0.66 0.629938
Target:  5'- -cGgCGgGGUGGCgCCgGCGAacGCGCUCg -3'
miRNA:   3'- cuCgGCgUCGCCGaGG-CGCU--UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 11856 0.66 0.629938
Target:  5'- -cGCCGCccuGCgGGCggCGCGAGCGUa- -3'
miRNA:   3'- cuCGGCGu--CG-CCGagGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 52914 0.66 0.629938
Target:  5'- -cGCgGgCAGCGGCUcggggcgcCCGCGAAgGC-Cg -3'
miRNA:   3'- cuCGgC-GUCGCCGA--------GGCGCUUgCGaG- -5'
6491 5' -61.5 NC_001847.1 + 33180 0.66 0.629938
Target:  5'- -uGCCGUGaCGGC-CCGCGA--GCUCg -3'
miRNA:   3'- cuCGGCGUcGCCGaGGCGCUugCGAG- -5'
6491 5' -61.5 NC_001847.1 + 92977 0.66 0.629938
Target:  5'- cGGGCgGgCGGCGuGCagccacaCGCGAGCGCUg -3'
miRNA:   3'- -CUCGgC-GUCGC-CGag-----GCGCUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 107993 0.66 0.629938
Target:  5'- uGGCCGCcGCGGCUgCGCcccccGGACGg-- -3'
miRNA:   3'- cUCGGCGuCGCCGAgGCG-----CUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 116250 0.66 0.629938
Target:  5'- uGGCgGUAcGCGGCgCUGCGGAcucuggcgcCGCUCg -3'
miRNA:   3'- cUCGgCGU-CGCCGaGGCGCUU---------GCGAG- -5'
6491 5' -61.5 NC_001847.1 + 20028 0.66 0.629938
Target:  5'- aGGGCgGCccuGCGGCcgCCGCccuGGGCGCg- -3'
miRNA:   3'- -CUCGgCGu--CGCCGa-GGCG---CUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 83028 0.66 0.629938
Target:  5'- -cGCCGC--CGGC-CCGCGGcCGCUa -3'
miRNA:   3'- cuCGGCGucGCCGaGGCGCUuGCGAg -5'
6491 5' -61.5 NC_001847.1 + 115703 0.66 0.629938
Target:  5'- uGGCCcgGCAGCgGGCg-CGCGGccuuugGCGCUCc -3'
miRNA:   3'- cUCGG--CGUCG-CCGagGCGCU------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 75559 0.66 0.629938
Target:  5'- cGGCCG-AGCuGC-CCGUGAGCGC-Cg -3'
miRNA:   3'- cUCGGCgUCGcCGaGGCGCUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 34080 0.66 0.628934
Target:  5'- --cCCGCGGCGGCcccggggccggccUCgGCGggUGCg- -3'
miRNA:   3'- cucGGCGUCGCCG-------------AGgCGCuuGCGag -5'
6491 5' -61.5 NC_001847.1 + 12639 0.66 0.628934
Target:  5'- cGGCCGCuGCGGCUgCGgGGgagaggaGCGUg- -3'
miRNA:   3'- cUCGGCGuCGCCGAgGCgCU-------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 19316 0.66 0.628934
Target:  5'- cGGCCGCGGCcguGGCUguuaacgcaagcgCCGCGGccgggucuuGCGCg- -3'
miRNA:   3'- cUCGGCGUCG---CCGA-------------GGCGCU---------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 76597 0.66 0.619901
Target:  5'- -cGCCGCuggcGGCGGCgaagaCCGCGGcgGC-CUCu -3'
miRNA:   3'- cuCGGCG----UCGCCGa----GGCGCU--UGcGAG- -5'
6491 5' -61.5 NC_001847.1 + 39115 0.66 0.619901
Target:  5'- uAGCgcaaCGCGGCGGCcgacgcgCCGCGcuGGgGCUCg -3'
miRNA:   3'- cUCG----GCGUCGCCGa------GGCGC--UUgCGAG- -5'
6491 5' -61.5 NC_001847.1 + 14560 0.66 0.619901
Target:  5'- -cGCCGCAGCgcgGGUgCUGgCGGGCGCg- -3'
miRNA:   3'- cuCGGCGUCG---CCGaGGC-GCUUGCGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.