Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6492 | 3' | -52.8 | NC_001847.1 | + | 31246 | 0.66 | 0.962678 |
Target: 5'- ---cGGCCGCGgcgcccGGCGUGGaCUggGa -3' miRNA: 3'- cgaaCUGGUGCaa----CCGCACCaGGuuC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 29649 | 0.66 | 0.966071 |
Target: 5'- cGCgggcgGACC-CGgaGGaCG-GGUCCGAGg -3' miRNA: 3'- -CGaa---CUGGuGCaaCC-GCaCCAGGUUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 83399 | 0.66 | 0.962678 |
Target: 5'- ---aGACCGCGUUGG-G-GGUCUuuGAGa -3' miRNA: 3'- cgaaCUGGUGCAACCgCaCCAGG--UUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 134059 | 0.66 | 0.962678 |
Target: 5'- ---cGGCCGCGgcgcccGGCGUGGaCUggGa -3' miRNA: 3'- cgaaCUGGUGCaa----CCGCACCaGGuuC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 97094 | 0.66 | 0.966071 |
Target: 5'- aGCUUaGCCGCGgcGGCGcGGUUggccgCGAGa -3' miRNA: 3'- -CGAAcUGGUGCaaCCGCaCCAG-----GUUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 26822 | 0.66 | 0.966071 |
Target: 5'- cGC-UGGCCAgcuUGUcuuGCGUGGUCCAc- -3' miRNA: 3'- -CGaACUGGU---GCAac-CGCACCAGGUuc -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 132462 | 0.66 | 0.966071 |
Target: 5'- cGCgggcgGACC-CGgaGGaCG-GGUCCGAGg -3' miRNA: 3'- -CGaa---CUGGuGCaaCC-GCaCCAGGUUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 48191 | 0.66 | 0.96924 |
Target: 5'- uGCUguGCCGCGccGGCGgccagGG-CCGAGg -3' miRNA: 3'- -CGAacUGGUGCaaCCGCa----CCaGGUUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 26612 | 0.66 | 0.974935 |
Target: 5'- uGCUgacGGCCACGUgGGCGcgaaagcccucgUGcUCCAAGc -3' miRNA: 3'- -CGAa--CUGGUGCAaCCGC------------ACcAGGUUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 70529 | 0.66 | 0.974935 |
Target: 5'- uGCUgGGCgGCGUgcUGGCGcUGG-CCGAc -3' miRNA: 3'- -CGAaCUGgUGCA--ACCGC-ACCaGGUUc -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 10841 | 0.66 | 0.974935 |
Target: 5'- cGCgcGACgGCGgc-GCGUGG-CCGAGg -3' miRNA: 3'- -CGaaCUGgUGCaacCGCACCaGGUUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 131158 | 0.66 | 0.972192 |
Target: 5'- aCUUGGCCGCGcUGGCGcugcucacGGcCCAc- -3' miRNA: 3'- cGAACUGGUGCaACCGCa-------CCaGGUuc -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 42128 | 0.66 | 0.966071 |
Target: 5'- cGCUUc-CCGCGUUGGCGagagcUGGcCCGGc -3' miRNA: 3'- -CGAAcuGGUGCAACCGC-----ACCaGGUUc -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 80759 | 0.66 | 0.974935 |
Target: 5'- aCUUGGuCCGCGccGGCGcGGaCCGGGa -3' miRNA: 3'- cGAACU-GGUGCaaCCGCaCCaGGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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