miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 3' -52.8 NC_001847.1 + 18830 1.12 0.003262
Target:  5'- aGCUUGACCACGUUGGCGUGGUCCAAGg -3'
miRNA:   3'- -CGAACUGGUGCAACCGCACCAGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 81812 0.75 0.618078
Target:  5'- cGCUUu-CCGCugcGGCGUGGUCCAGGc -3'
miRNA:   3'- -CGAAcuGGUGcaaCCGCACCAGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 111050 0.74 0.639095
Target:  5'- ---cGGCUACGagGGCGUGGUCCu-- -3'
miRNA:   3'- cgaaCUGGUGCaaCCGCACCAGGuuc -5'
6492 3' -52.8 NC_001847.1 + 59166 0.73 0.701716
Target:  5'- cGCUUGGCCA-GggGGCGgcGGUCgAGGg -3'
miRNA:   3'- -CGAACUGGUgCaaCCGCa-CCAGgUUC- -5'
6492 3' -52.8 NC_001847.1 + 22415 0.71 0.800063
Target:  5'- uGCUcGuCCGCGggGGCGgGGcCCGAGa -3'
miRNA:   3'- -CGAaCuGGUGCaaCCGCaCCaGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 125228 0.71 0.800063
Target:  5'- uGCUcGuCCGCGggGGCGgGGcCCGAGa -3'
miRNA:   3'- -CGAaCuGGUGCaaCCGCaCCaGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 125432 0.71 0.818121
Target:  5'- aGCgagUGGCCGCGcagGGCGc-GUCCGGGg -3'
miRNA:   3'- -CGa--ACUGGUGCaa-CCGCacCAGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 22619 0.71 0.818121
Target:  5'- aGCgagUGGCCGCGcagGGCGc-GUCCGGGg -3'
miRNA:   3'- -CGa--ACUGGUGCaa-CCGCacCAGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 84132 0.71 0.826887
Target:  5'- aGC---GCCGCGaaagcUGGCGUGGUCCGu- -3'
miRNA:   3'- -CGaacUGGUGCa----ACCGCACCAGGUuc -5'
6492 3' -52.8 NC_001847.1 + 97301 0.7 0.835466
Target:  5'- ---gGACCGCGggGcGCGUGccuccGUCCGAGg -3'
miRNA:   3'- cgaaCUGGUGCaaC-CGCAC-----CAGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 62151 0.7 0.867758
Target:  5'- cGCaUGGCCGCGgcGGCGUaGG-CCGc- -3'
miRNA:   3'- -CGaACUGGUGCaaCCGCA-CCaGGUuc -5'
6492 3' -52.8 NC_001847.1 + 36000 0.69 0.882591
Target:  5'- cGCUgcaggcGGCCGCG--GGCGUGGUgCUggGg -3'
miRNA:   3'- -CGAa-----CUGGUGCaaCCGCACCA-GGuuC- -5'
6492 3' -52.8 NC_001847.1 + 102146 0.68 0.921341
Target:  5'- cGCgcGACCACGgcGGCGcGGcCCGc- -3'
miRNA:   3'- -CGaaCUGGUGCaaCCGCaCCaGGUuc -5'
6492 3' -52.8 NC_001847.1 + 113616 0.68 0.932265
Target:  5'- aGCUUGGgCGCGUUGGCccgcgcGGcccccgCCGAGg -3'
miRNA:   3'- -CGAACUgGUGCAACCGca----CCa-----GGUUC- -5'
6492 3' -52.8 NC_001847.1 + 13247 0.67 0.937844
Target:  5'- aGCggGGCCACGcgGGCGguucgcaggcaggccGcGUCCAGGg -3'
miRNA:   3'- -CGaaCUGGUGCaaCCGCa--------------C-CAGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 45341 0.67 0.951105
Target:  5'- cGCUUGAgCAgGUUcucCGUGGUCCGc- -3'
miRNA:   3'- -CGAACUgGUgCAAcc-GCACCAGGUuc -5'
6492 3' -52.8 NC_001847.1 + 81939 0.67 0.952772
Target:  5'- aGCUUGACgGCGUcgaggUGGCGgcgcgccacagccgGGUCgCAGc -3'
miRNA:   3'- -CGAACUGgUGCA-----ACCGCa-------------CCAG-GUUc -5'
6492 3' -52.8 NC_001847.1 + 81048 0.67 0.959056
Target:  5'- uGCgggGGCgACGUgGGCGUGGg-CGGGg -3'
miRNA:   3'- -CGaa-CUGgUGCAaCCGCACCagGUUC- -5'
6492 3' -52.8 NC_001847.1 + 23319 0.67 0.959056
Target:  5'- cGCUgagccgcGCCACGUccuUGGCGUcGUCCGc- -3'
miRNA:   3'- -CGAac-----UGGUGCA---ACCGCAcCAGGUuc -5'
6492 3' -52.8 NC_001847.1 + 134059 0.66 0.962678
Target:  5'- ---cGGCCGCGgcgcccGGCGUGGaCUggGa -3'
miRNA:   3'- cgaaCUGGUGCaa----CCGCACCaGGuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.