miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 3' -52.8 NC_001847.1 + 59166 0.73 0.701716
Target:  5'- cGCUUGGCCA-GggGGCGgcGGUCgAGGg -3'
miRNA:   3'- -CGAACUGGUgCaaCCGCa-CCAGgUUC- -5'
6492 3' -52.8 NC_001847.1 + 80759 0.66 0.974935
Target:  5'- aCUUGGuCCGCGccGGCGcGGaCCGGGa -3'
miRNA:   3'- cGAACU-GGUGCaaCCGCaCCaGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 10841 0.66 0.974935
Target:  5'- cGCgcGACgGCGgc-GCGUGG-CCGAGg -3'
miRNA:   3'- -CGaaCUGgUGCaacCGCACCaGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 70529 0.66 0.974935
Target:  5'- uGCUgGGCgGCGUgcUGGCGcUGG-CCGAc -3'
miRNA:   3'- -CGAaCUGgUGCA--ACCGC-ACCaGGUUc -5'
6492 3' -52.8 NC_001847.1 + 26612 0.66 0.974935
Target:  5'- uGCUgacGGCCACGUgGGCGcgaaagcccucgUGcUCCAAGc -3'
miRNA:   3'- -CGAa--CUGGUGCAaCCGC------------ACcAGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 48191 0.66 0.96924
Target:  5'- uGCUguGCCGCGccGGCGgccagGG-CCGAGg -3'
miRNA:   3'- -CGAacUGGUGCaaCCGCa----CCaGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 132462 0.66 0.966071
Target:  5'- cGCgggcgGACC-CGgaGGaCG-GGUCCGAGg -3'
miRNA:   3'- -CGaa---CUGGuGCaaCC-GCaCCAGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 26822 0.66 0.966071
Target:  5'- cGC-UGGCCAgcuUGUcuuGCGUGGUCCAc- -3'
miRNA:   3'- -CGaACUGGU---GCAac-CGCACCAGGUuc -5'
6492 3' -52.8 NC_001847.1 + 97094 0.66 0.966071
Target:  5'- aGCUUaGCCGCGgcGGCGcGGUUggccgCGAGa -3'
miRNA:   3'- -CGAAcUGGUGCaaCCGCaCCAG-----GUUC- -5'
6492 3' -52.8 NC_001847.1 + 134059 0.66 0.962678
Target:  5'- ---cGGCCGCGgcgcccGGCGUGGaCUggGa -3'
miRNA:   3'- cgaaCUGGUGCaa----CCGCACCaGGuuC- -5'
6492 3' -52.8 NC_001847.1 + 83399 0.66 0.962678
Target:  5'- ---aGACCGCGUUGG-G-GGUCUuuGAGa -3'
miRNA:   3'- cgaaCUGGUGCAACCgCaCCAGG--UUC- -5'
6492 3' -52.8 NC_001847.1 + 125228 0.71 0.800063
Target:  5'- uGCUcGuCCGCGggGGCGgGGcCCGAGa -3'
miRNA:   3'- -CGAaCuGGUGCaaCCGCaCCaGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 125432 0.71 0.818121
Target:  5'- aGCgagUGGCCGCGcagGGCGc-GUCCGGGg -3'
miRNA:   3'- -CGa--ACUGGUGCaa-CCGCacCAGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 97301 0.7 0.835466
Target:  5'- ---gGACCGCGggGcGCGUGccuccGUCCGAGg -3'
miRNA:   3'- cgaaCUGGUGCaaC-CGCAC-----CAGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 36000 0.69 0.882591
Target:  5'- cGCUgcaggcGGCCGCG--GGCGUGGUgCUggGg -3'
miRNA:   3'- -CGAa-----CUGGUGCaaCCGCACCA-GGuuC- -5'
6492 3' -52.8 NC_001847.1 + 45341 0.67 0.951105
Target:  5'- cGCUUGAgCAgGUUcucCGUGGUCCGc- -3'
miRNA:   3'- -CGAACUgGUgCAAcc-GCACCAGGUuc -5'
6492 3' -52.8 NC_001847.1 + 23319 0.67 0.959056
Target:  5'- cGCUgagccgcGCCACGUccuUGGCGUcGUCCGc- -3'
miRNA:   3'- -CGAac-----UGGUGCA---ACCGCAcCAGGUuc -5'
6492 3' -52.8 NC_001847.1 + 81048 0.67 0.959056
Target:  5'- uGCgggGGCgACGUgGGCGUGGg-CGGGg -3'
miRNA:   3'- -CGaa-CUGgUGCAaCCGCACCagGUUC- -5'
6492 3' -52.8 NC_001847.1 + 18830 1.12 0.003262
Target:  5'- aGCUUGACCACGUUGGCGUGGUCCAAGg -3'
miRNA:   3'- -CGAACUGGUGCAACCGCACCAGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 42128 0.66 0.966071
Target:  5'- cGCUUc-CCGCGUUGGCGagagcUGGcCCGGc -3'
miRNA:   3'- -CGAAcuGGUGCAACCGC-----ACCaGGUUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.