Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6492 | 3' | -52.8 | NC_001847.1 | + | 113616 | 0.68 | 0.932265 |
Target: 5'- aGCUUGGgCGCGUUGGCccgcgcGGcccccgCCGAGg -3' miRNA: 3'- -CGAACUgGUGCAACCGca----CCa-----GGUUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 102146 | 0.68 | 0.921341 |
Target: 5'- cGCgcGACCACGgcGGCGcGGcCCGc- -3' miRNA: 3'- -CGaaCUGGUGCaaCCGCaCCaGGUuc -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 36000 | 0.69 | 0.882591 |
Target: 5'- cGCUgcaggcGGCCGCG--GGCGUGGUgCUggGg -3' miRNA: 3'- -CGAa-----CUGGUGCaaCCGCACCA-GGuuC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 62151 | 0.7 | 0.867758 |
Target: 5'- cGCaUGGCCGCGgcGGCGUaGG-CCGc- -3' miRNA: 3'- -CGaACUGGUGCaaCCGCA-CCaGGUuc -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 97301 | 0.7 | 0.835466 |
Target: 5'- ---gGACCGCGggGcGCGUGccuccGUCCGAGg -3' miRNA: 3'- cgaaCUGGUGCaaC-CGCAC-----CAGGUUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 84132 | 0.71 | 0.826887 |
Target: 5'- aGC---GCCGCGaaagcUGGCGUGGUCCGu- -3' miRNA: 3'- -CGaacUGGUGCa----ACCGCACCAGGUuc -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 22619 | 0.71 | 0.818121 |
Target: 5'- aGCgagUGGCCGCGcagGGCGc-GUCCGGGg -3' miRNA: 3'- -CGa--ACUGGUGCaa-CCGCacCAGGUUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 125432 | 0.71 | 0.818121 |
Target: 5'- aGCgagUGGCCGCGcagGGCGc-GUCCGGGg -3' miRNA: 3'- -CGa--ACUGGUGCaa-CCGCacCAGGUUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 125228 | 0.71 | 0.800063 |
Target: 5'- uGCUcGuCCGCGggGGCGgGGcCCGAGa -3' miRNA: 3'- -CGAaCuGGUGCaaCCGCaCCaGGUUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 22415 | 0.71 | 0.800063 |
Target: 5'- uGCUcGuCCGCGggGGCGgGGcCCGAGa -3' miRNA: 3'- -CGAaCuGGUGCaaCCGCaCCaGGUUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 59166 | 0.73 | 0.701716 |
Target: 5'- cGCUUGGCCA-GggGGCGgcGGUCgAGGg -3' miRNA: 3'- -CGAACUGGUgCaaCCGCa-CCAGgUUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 111050 | 0.74 | 0.639095 |
Target: 5'- ---cGGCUACGagGGCGUGGUCCu-- -3' miRNA: 3'- cgaaCUGGUGCaaCCGCACCAGGuuc -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 81812 | 0.75 | 0.618078 |
Target: 5'- cGCUUu-CCGCugcGGCGUGGUCCAGGc -3' miRNA: 3'- -CGAAcuGGUGcaaCCGCACCAGGUUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 18830 | 1.12 | 0.003262 |
Target: 5'- aGCUUGACCACGUUGGCGUGGUCCAAGg -3' miRNA: 3'- -CGAACUGGUGCAACCGCACCAGGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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