miRNA display CGI


Results 41 - 60 of 300 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 100388 0.66 0.813726
Target:  5'- cGCGcAGCCgcgccagcUCGGCC-GCGUcGaAGGCg -3'
miRNA:   3'- uCGUaUCGG--------AGCCGGuCGCAuC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 13319 0.66 0.82242
Target:  5'- aGGCAgacgGGCUcCGGCacgGGCGgcgAGcAGGCg -3'
miRNA:   3'- -UCGUa---UCGGaGCCGg--UCGCa--UC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 28851 0.66 0.82242
Target:  5'- cGCGcGGCCgcgCGcgcgacGCCGGCGgcgcuGGGGCg -3'
miRNA:   3'- uCGUaUCGGa--GC------CGGUCGCau---CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 133111 0.66 0.82242
Target:  5'- -uCGUGGCCaCGGCCGGCGccgugcUGGAaaaccugcGGCu -3'
miRNA:   3'- ucGUAUCGGaGCCGGUCGC------AUCU--------CCG- -5'
6492 5' -57.4 NC_001847.1 + 108619 0.66 0.795845
Target:  5'- aAGCAUGGCCgaacgccccCGGCCccGCGcccGGcAGGCc -3'
miRNA:   3'- -UCGUAUCGGa--------GCCGGu-CGCa--UC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 88840 0.66 0.795845
Target:  5'- cGCucGGCgCUaCGGCUGGcCGUAGAGGa -3'
miRNA:   3'- uCGuaUCG-GA-GCCGGUC-GCAUCUCCg -5'
6492 5' -57.4 NC_001847.1 + 15001 0.66 0.813726
Target:  5'- aAGCGcc-CCUCGGCC-GCGguGGGGCc -3'
miRNA:   3'- -UCGUaucGGAGCCGGuCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 18613 0.66 0.82242
Target:  5'- cGC--GGCgUCGGCgCGcGCGUAGcgcAGGCa -3'
miRNA:   3'- uCGuaUCGgAGCCG-GU-CGCAUC---UCCG- -5'
6492 5' -57.4 NC_001847.1 + 37169 0.66 0.82242
Target:  5'- uGGCGgucaacAGCCUCGcGCCGGgagagcccgGUGcGAGGCg -3'
miRNA:   3'- -UCGUa-----UCGGAGC-CGGUCg--------CAU-CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 10129 0.66 0.813726
Target:  5'- cGGCGagcgGGCC-CGGCCguAGCGcgagcgGGAGGg -3'
miRNA:   3'- -UCGUa---UCGGaGCCGG--UCGCa-----UCUCCg -5'
6492 5' -57.4 NC_001847.1 + 17259 0.66 0.804865
Target:  5'- cGGgGUAGCCguugCGGaaCCAgugcaggcGCGUGGAGcGCg -3'
miRNA:   3'- -UCgUAUCGGa---GCC--GGU--------CGCAUCUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 113517 0.66 0.812848
Target:  5'- gGGCGcGGCCcgCGccggccaagcgccGCCAGCGaguuuagGGGGGCg -3'
miRNA:   3'- -UCGUaUCGGa-GC-------------CGGUCGCa------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 103953 0.66 0.813726
Target:  5'- cGGCGgcGCCUCGGCgcgcggcuccggCAGCGcGGccGCg -3'
miRNA:   3'- -UCGUauCGGAGCCG------------GUCGCaUCucCG- -5'
6492 5' -57.4 NC_001847.1 + 27734 0.66 0.795845
Target:  5'- cGGCGgaAGCCgcggCGGCgGuuGCGgcgGGGGGCu -3'
miRNA:   3'- -UCGUa-UCGGa---GCCGgU--CGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 114087 0.66 0.795845
Target:  5'- cGCcccagGGCCUCagGGCCGGgGgucucGGGGCa -3'
miRNA:   3'- uCGua---UCGGAG--CCGGUCgCau---CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 62473 0.66 0.804865
Target:  5'- cAGCAgGGCCggggucgcCGGCgGGCGgccgcggGGuGGCg -3'
miRNA:   3'- -UCGUaUCGGa-------GCCGgUCGCa------UCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 101082 0.66 0.804865
Target:  5'- cGCGggGGCCg-GGUCGGCGgGGcGGGCg -3'
miRNA:   3'- uCGUa-UCGGagCCGGUCGCaUC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 74162 0.66 0.804865
Target:  5'- uGGCGgcGCCUC--UCGGCGUGG-GGCc -3'
miRNA:   3'- -UCGUauCGGAGccGGUCGCAUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 24743 0.66 0.786675
Target:  5'- aGGCcgGGCCgugCaGCCGGCu--GAGGUg -3'
miRNA:   3'- -UCGuaUCGGa--GcCGGUCGcauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 45288 0.66 0.82242
Target:  5'- cGGCGagccGGCCUUGcaGCCGGCGgucGcAGGCg -3'
miRNA:   3'- -UCGUa---UCGGAGC--CGGUCGCau-C-UCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.