miRNA display CGI


Results 21 - 40 of 300 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 62473 0.66 0.804865
Target:  5'- cAGCAgGGCCggggucgcCGGCgGGCGgccgcggGGuGGCg -3'
miRNA:   3'- -UCGUaUCGGa-------GCCGgUCGCa------UCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 17259 0.66 0.804865
Target:  5'- cGGgGUAGCCguugCGGaaCCAgugcaggcGCGUGGAGcGCg -3'
miRNA:   3'- -UCgUAUCGGa---GCC--GGU--------CGCAUCUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 88290 0.66 0.786675
Target:  5'- uGCAcUGGCCUUGcGCC-GCG--GGGGCg -3'
miRNA:   3'- uCGU-AUCGGAGC-CGGuCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 24743 0.66 0.786675
Target:  5'- aGGCcgGGCCgugCaGCCGGCu--GAGGUg -3'
miRNA:   3'- -UCGuaUCGGa--GcCGGUCGcauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 18613 0.66 0.82242
Target:  5'- cGC--GGCgUCGGCgCGcGCGUAGcgcAGGCa -3'
miRNA:   3'- uCGuaUCGgAGCCG-GU-CGCAUC---UCCG- -5'
6492 5' -57.4 NC_001847.1 + 44242 0.66 0.786675
Target:  5'- gGGCGUggGGCUgagCGcGCCGGCGacuGGGCa -3'
miRNA:   3'- -UCGUA--UCGGa--GC-CGGUCGCaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 43236 0.66 0.786675
Target:  5'- uGGCGgugggGGCgCgcgggCGGCgCGGCGcccgGGGGGCa -3'
miRNA:   3'- -UCGUa----UCG-Ga----GCCG-GUCGCa---UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 7761 0.66 0.804865
Target:  5'- gGGCA-AGCCcgaCGGCCguuGGUGccGAGGCu -3'
miRNA:   3'- -UCGUaUCGGa--GCCGG---UCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 45855 0.66 0.830937
Target:  5'- cGGCcgaGGCCUCGGCC-GCGgcGc-GCg -3'
miRNA:   3'- -UCGua-UCGGAGCCGGuCGCauCucCG- -5'
6492 5' -57.4 NC_001847.1 + 26068 0.66 0.808429
Target:  5'- aGGCAaccugGGCC-CGGCagcagagauauuuaaCGGCGguuugAGGGGCg -3'
miRNA:   3'- -UCGUa----UCGGaGCCG---------------GUCGCa----UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 27734 0.66 0.795845
Target:  5'- cGGCGgaAGCCgcggCGGCgGuuGCGgcgGGGGGCu -3'
miRNA:   3'- -UCGUa-UCGGa---GCCGgU--CGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 103953 0.66 0.813726
Target:  5'- cGGCGgcGCCUCGGCgcgcggcuccggCAGCGcGGccGCg -3'
miRNA:   3'- -UCGUauCGGAGCCG------------GUCGCaUCucCG- -5'
6492 5' -57.4 NC_001847.1 + 47337 0.66 0.830937
Target:  5'- aAGC--GGUUUUGGCCcGCGUcgaagacgcggaAGAGGCc -3'
miRNA:   3'- -UCGuaUCGGAGCCGGuCGCA------------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 45288 0.66 0.82242
Target:  5'- cGGCGagccGGCCUUGcaGCCGGCGgucGcAGGCg -3'
miRNA:   3'- -UCGUa---UCGGAGC--CGGUCGCau-C-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 43070 0.66 0.804865
Target:  5'- cGGCAacgcgGGCgCUgcUGGCuCGGCGgcGGAGGCg -3'
miRNA:   3'- -UCGUa----UCG-GA--GCCG-GUCGCa-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 54083 0.66 0.813726
Target:  5'- cGCc--GCCUUcGCCGGCaaccUAGAGGCg -3'
miRNA:   3'- uCGuauCGGAGcCGGUCGc---AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 96936 0.66 0.82242
Target:  5'- cGGCccgGGCCUCcGCgGGCGgc-AGGCg -3'
miRNA:   3'- -UCGua-UCGGAGcCGgUCGCaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 34235 0.66 0.830937
Target:  5'- uGCA-GGCCcaguacgCGGCgCGGCGc-GAGGCg -3'
miRNA:   3'- uCGUaUCGGa------GCCG-GUCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 105090 0.66 0.82242
Target:  5'- cGGCGgaAGCCgccGUCGGCGgcGGGGCc -3'
miRNA:   3'- -UCGUa-UCGGagcCGGUCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 116111 0.66 0.810201
Target:  5'- cGCcgGGCCU--GCCGGCGgggucacgcgcgaAGAGGCc -3'
miRNA:   3'- uCGuaUCGGAgcCGGUCGCa------------UCUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.