miRNA display CGI


Results 1 - 20 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 82894 0.66 0.804865
Target:  5'- cGCAgccaAGCCgCGGCgcgCGGCGcccGGGGGCu -3'
miRNA:   3'- uCGUa---UCGGaGCCG---GUCGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 17259 0.66 0.804865
Target:  5'- cGGgGUAGCCguugCGGaaCCAgugcaggcGCGUGGAGcGCg -3'
miRNA:   3'- -UCgUAUCGGa---GCC--GGU--------CGCAUCUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 43070 0.66 0.804865
Target:  5'- cGGCAacgcgGGCgCUgcUGGCuCGGCGgcGGAGGCg -3'
miRNA:   3'- -UCGUa----UCG-GA--GCCG-GUCGCa-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 24389 0.66 0.78575
Target:  5'- uAGCGUugacaaaaauggcGGCCguggCGGCCGcCGUGGAcagagcGGCa -3'
miRNA:   3'- -UCGUA-------------UCGGa---GCCGGUcGCAUCU------CCG- -5'
6492 5' -57.4 NC_001847.1 + 88290 0.66 0.786675
Target:  5'- uGCAcUGGCCUUGcGCC-GCG--GGGGCg -3'
miRNA:   3'- uCGU-AUCGGAGC-CGGuCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 88840 0.66 0.795845
Target:  5'- cGCucGGCgCUaCGGCUGGcCGUAGAGGa -3'
miRNA:   3'- uCGuaUCG-GA-GCCGGUC-GCAUCUCCg -5'
6492 5' -57.4 NC_001847.1 + 74162 0.66 0.804865
Target:  5'- uGGCGgcGCCUC--UCGGCGUGG-GGCc -3'
miRNA:   3'- -UCGUauCGGAGccGGUCGCAUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 24743 0.66 0.786675
Target:  5'- aGGCcgGGCCgugCaGCCGGCu--GAGGUg -3'
miRNA:   3'- -UCGuaUCGGa--GcCGGUCGcauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 62473 0.66 0.804865
Target:  5'- cAGCAgGGCCggggucgcCGGCgGGCGgccgcggGGuGGCg -3'
miRNA:   3'- -UCGUaUCGGa-------GCCGgUCGCa------UCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 108619 0.66 0.795845
Target:  5'- aAGCAUGGCCgaacgccccCGGCCccGCGcccGGcAGGCc -3'
miRNA:   3'- -UCGUAUCGGa--------GCCGGu-CGCa--UC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 58815 0.66 0.795845
Target:  5'- cGCcgGcGCCUgGGCCGGUGcgAGGgucGGCa -3'
miRNA:   3'- uCGuaU-CGGAgCCGGUCGCa-UCU---CCG- -5'
6492 5' -57.4 NC_001847.1 + 7761 0.66 0.804865
Target:  5'- gGGCA-AGCCcgaCGGCCguuGGUGccGAGGCu -3'
miRNA:   3'- -UCGUaUCGGa--GCCGG---UCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 34040 0.66 0.804865
Target:  5'- aGGCGaugGGCCccgCGGCgCGcGCGUuuuucgAGGGGCa -3'
miRNA:   3'- -UCGUa--UCGGa--GCCG-GU-CGCA------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 108022 0.66 0.786675
Target:  5'- cGGCucucucGCCgcggCGGCCGGCG---GGGCg -3'
miRNA:   3'- -UCGuau---CGGa---GCCGGUCGCaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 27734 0.66 0.795845
Target:  5'- cGGCGgaAGCCgcggCGGCgGuuGCGgcgGGGGGCu -3'
miRNA:   3'- -UCGUa-UCGGa---GCCGgU--CGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 101082 0.66 0.804865
Target:  5'- cGCGggGGCCg-GGUCGGCGgGGcGGGCg -3'
miRNA:   3'- uCGUa-UCGGagCCGGUCGCaUC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 114087 0.66 0.795845
Target:  5'- cGCcccagGGCCUCagGGCCGGgGgucucGGGGCa -3'
miRNA:   3'- uCGua---UCGGAG--CCGGUCgCau---CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 43236 0.66 0.786675
Target:  5'- uGGCGgugggGGCgCgcgggCGGCgCGGCGcccgGGGGGCa -3'
miRNA:   3'- -UCGUa----UCG-Ga----GCCG-GUCGCa---UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 26068 0.66 0.808429
Target:  5'- aGGCAaccugGGCC-CGGCagcagagauauuuaaCGGCGguuugAGGGGCg -3'
miRNA:   3'- -UCGUa----UCGGaGCCG---------------GUCGCa----UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 44242 0.66 0.786675
Target:  5'- gGGCGUggGGCUgagCGcGCCGGCGacuGGGCa -3'
miRNA:   3'- -UCGUA--UCGGa--GC-CGGUCGCaucUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.