miRNA display CGI


Results 1 - 20 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 139 0.7 0.606465
Target:  5'- cGCG-GGCCUCGGgccCCGGCcgGGGGGCc -3'
miRNA:   3'- uCGUaUCGGAGCC---GGUCGcaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 232 0.68 0.688742
Target:  5'- gAGCccgGGCCUCGcGCCccgacgcccGGCGcccAGGGGCc -3'
miRNA:   3'- -UCGua-UCGGAGC-CGG---------UCGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 876 0.66 0.830937
Target:  5'- cGCGcGGCggCGGCCcGCGccGGGGCc -3'
miRNA:   3'- uCGUaUCGgaGCCGGuCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 1140 0.66 0.813726
Target:  5'- cGGCGgcGCCUCGGCgcgcggcuccggCAGCGcGGccGCg -3'
miRNA:   3'- -UCGUauCGGAGCCG------------GUCGCaUCucCG- -5'
6492 5' -57.4 NC_001847.1 + 1494 0.71 0.534302
Target:  5'- cGGCGgcGCCUCGggguagaGCCGcGCGUAGGcGGCc -3'
miRNA:   3'- -UCGUauCGGAGC-------CGGU-CGCAUCU-CCG- -5'
6492 5' -57.4 NC_001847.1 + 1670 0.67 0.729012
Target:  5'- cGGCcgGGCCgucgcgCGGCCAGUucucGGGGUc -3'
miRNA:   3'- -UCGuaUCGGa-----GCCGGUCGcau-CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 2106 0.72 0.44867
Target:  5'- cGGCGgcgGGCCgcgaucUCGGCCAGCGccucGGGGUc -3'
miRNA:   3'- -UCGUa--UCGG------AGCCGGUCGCau--CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 2182 0.67 0.748674
Target:  5'- cGCGccGCCUgGG-CGGCGUGcGGGCg -3'
miRNA:   3'- uCGUauCGGAgCCgGUCGCAUcUCCG- -5'
6492 5' -57.4 NC_001847.1 + 2277 0.66 0.82242
Target:  5'- cGGCGgaAGCCgccGUCGGCGgcGGGGCc -3'
miRNA:   3'- -UCGUa-UCGGagcCGGUCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 2391 0.67 0.748674
Target:  5'- cGCcgGcGCCUCGGCCcagAGuCGUccucccccgAGGGGCc -3'
miRNA:   3'- uCGuaU-CGGAGCCGG---UC-GCA---------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 2959 0.7 0.56553
Target:  5'- cGGCGgccGCCUCGGCgcgCAGCGccgccGGGGCc -3'
miRNA:   3'- -UCGUau-CGGAGCCG---GUCGCau---CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 3268 0.67 0.748674
Target:  5'- cGCcgGcGCCgcgCGGCCGGCG-AGcacGGCg -3'
miRNA:   3'- uCGuaU-CGGa--GCCGGUCGCaUCu--CCG- -5'
6492 5' -57.4 NC_001847.1 + 3527 0.67 0.758354
Target:  5'- gGGcCGUGGCCgacuaCGGCCgcgAGCGcGGcGGCg -3'
miRNA:   3'- -UC-GUAUCGGa----GCCGG---UCGCaUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 3727 0.68 0.70901
Target:  5'- cGCGUAGCgCgCGGCCGccucGCGgaucucGGGGCa -3'
miRNA:   3'- uCGUAUCG-GaGCCGGU----CGCau----CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 3812 0.67 0.758354
Target:  5'- cGGCAcggGGCgUCGGCCgcgAGCGU---GGCg -3'
miRNA:   3'- -UCGUa--UCGgAGCCGG---UCGCAucuCCG- -5'
6492 5' -57.4 NC_001847.1 + 4079 0.72 0.486292
Target:  5'- cAGCcucGGCCUCGGCCucAGCGUc--GGCg -3'
miRNA:   3'- -UCGua-UCGGAGCCGG--UCGCAucuCCG- -5'
6492 5' -57.4 NC_001847.1 + 4261 0.67 0.76792
Target:  5'- cAGC--AGCCagUCGGCUuuGGCGgccacGAGGCg -3'
miRNA:   3'- -UCGuaUCGG--AGCCGG--UCGCau---CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 4766 0.67 0.729012
Target:  5'- cGGCucAUGGCCUCGGCgaaggGGCGUuccagcauGAcGGCa -3'
miRNA:   3'- -UCG--UAUCGGAGCCGg----UCGCAu-------CU-CCG- -5'
6492 5' -57.4 NC_001847.1 + 5209 0.66 0.786675
Target:  5'- cGGCucucucGCCgcggCGGCCGGCG---GGGCg -3'
miRNA:   3'- -UCGuau---CGGa---GCCGGUCGCaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 5383 0.66 0.830937
Target:  5'- cGGCGgu-CCgagCGGCCGGCGgcacAGGCc -3'
miRNA:   3'- -UCGUaucGGa--GCCGGUCGCauc-UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.