miRNA display CGI


Results 1 - 20 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 135135 0.71 0.535301
Target:  5'- cGCAgggGGCCcgcgCGGCgCGGCGcGGAGGg -3'
miRNA:   3'- uCGUa--UCGGa---GCCG-GUCGCaUCUCCg -5'
6492 5' -57.4 NC_001847.1 + 134631 0.7 0.596184
Target:  5'- cAGCGUGGgCUgggggcgggcCGGCagcaGGCGcGGAGGCg -3'
miRNA:   3'- -UCGUAUCgGA----------GCCGg---UCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 134506 0.72 0.439516
Target:  5'- uGUcgGGCCUCGGg-GGCGgggGGAGGCg -3'
miRNA:   3'- uCGuaUCGGAGCCggUCGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 134472 0.67 0.7477
Target:  5'- uGGCAUAGgCgCGGCCAacgaagugcacggGUGUAGuguGGGCc -3'
miRNA:   3'- -UCGUAUCgGaGCCGGU-------------CGCAUC---UCCG- -5'
6492 5' -57.4 NC_001847.1 + 134271 0.72 0.476742
Target:  5'- cGGCGcgGGCCgccGCCGcGCGUGGAGGUg -3'
miRNA:   3'- -UCGUa-UCGGagcCGGU-CGCAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 134239 0.66 0.813726
Target:  5'- cGGCG-GGCggCGGCCGGCGgccGcGGCg -3'
miRNA:   3'- -UCGUaUCGgaGCCGGUCGCau-CuCCG- -5'
6492 5' -57.4 NC_001847.1 + 134180 0.77 0.255735
Target:  5'- cGCAUAgacGCC-CGGCgCAGCGUGGAgcGGCg -3'
miRNA:   3'- uCGUAU---CGGaGCCG-GUCGCAUCU--CCG- -5'
6492 5' -57.4 NC_001847.1 + 134022 0.73 0.421535
Target:  5'- gGGC--GGUCUC-GCCAGCGUcgcAGGGGCa -3'
miRNA:   3'- -UCGuaUCGGAGcCGGUCGCA---UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 133972 0.67 0.781105
Target:  5'- cGGCgGUGGCCUucugcgCGGCCGcgcugccggagccgcGCGccGAGGCg -3'
miRNA:   3'- -UCG-UAUCGGA------GCCGGU---------------CGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 133895 0.68 0.719049
Target:  5'- cGGCGc-GCCgcugCGGCCGGUGUAccuGGCc -3'
miRNA:   3'- -UCGUauCGGa---GCCGGUCGCAUcu-CCG- -5'
6492 5' -57.4 NC_001847.1 + 133298 0.67 0.748674
Target:  5'- cGCAc-GCCUgGGCCGgGCGcUGGAcgGGCg -3'
miRNA:   3'- uCGUauCGGAgCCGGU-CGC-AUCU--CCG- -5'
6492 5' -57.4 NC_001847.1 + 133111 0.66 0.82242
Target:  5'- -uCGUGGCCaCGGCCGGCGccgugcUGGAaaaccugcGGCu -3'
miRNA:   3'- ucGUAUCGGaGCCGGUCGC------AUCU--------CCG- -5'
6492 5' -57.4 NC_001847.1 + 132408 0.72 0.439516
Target:  5'- cGCcgGGCCgggGGCCGGUggaaGUGGAGGUg -3'
miRNA:   3'- uCGuaUCGGag-CCGGUCG----CAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 132339 0.67 0.729012
Target:  5'- cGGCGcGGCUggCGGCCGcgcucGCGgcccUGGAGGCc -3'
miRNA:   3'- -UCGUaUCGGa-GCCGGU-----CGC----AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 132189 0.7 0.58593
Target:  5'- uGCGc-GCCgaggCGGCCGccGCGcUGGAGGCg -3'
miRNA:   3'- uCGUauCGGa---GCCGGU--CGC-AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 131918 0.71 0.525347
Target:  5'- cGCA-AGCCgCGG-CGGCGcGGAGGCa -3'
miRNA:   3'- uCGUaUCGGaGCCgGUCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 131805 0.69 0.616766
Target:  5'- -cCAUGGCCUacccggaGGCCGGCGccGGcGGCa -3'
miRNA:   3'- ucGUAUCGGAg------CCGGUCGCa-UCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 130795 0.75 0.323597
Target:  5'- aGGC--GGCCgCGGCCGGgGcGGAGGCg -3'
miRNA:   3'- -UCGuaUCGGaGCCGGUCgCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 127346 0.67 0.729012
Target:  5'- cGGCu--GCCgCGGCaggGGCGgcGGGGCc -3'
miRNA:   3'- -UCGuauCGGaGCCGg--UCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 125717 0.69 0.658006
Target:  5'- gAGCAUGGCugggCUgGGCUGGgGUGGGcuGGCu -3'
miRNA:   3'- -UCGUAUCG----GAgCCGGUCgCAUCU--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.