miRNA display CGI


Results 1 - 20 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 18865 1.1 0.001354
Target:  5'- uAGCAUAGCCUCGGCCAGCGUAGAGGCc -3'
miRNA:   3'- -UCGUAUCGGAGCCGGUCGCAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 33662 0.81 0.139876
Target:  5'- cGCGUGGCCgCGGCCcGCGcggggcUAGAGGCg -3'
miRNA:   3'- uCGUAUCGGaGCCGGuCGC------AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 5973 0.78 0.199989
Target:  5'- cGCGUaAGCCUCGGCUuuGCG-GGGGGCa -3'
miRNA:   3'- uCGUA-UCGGAGCCGGu-CGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 71077 0.78 0.20505
Target:  5'- uGGC--GGCgCUCGGCCGGCGcggccAGAGGCg -3'
miRNA:   3'- -UCGuaUCG-GAGCCGGUCGCa----UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 84764 0.78 0.215504
Target:  5'- gAGCAUGGCCaCGGCCAGC--AG-GGCg -3'
miRNA:   3'- -UCGUAUCGGaGCCGGUCGcaUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 46498 0.78 0.220901
Target:  5'- cAGCGUGGCCgagCGuuGCCAGCGgcagcgcucgGGGGGCg -3'
miRNA:   3'- -UCGUAUCGGa--GC--CGGUCGCa---------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 134180 0.77 0.255735
Target:  5'- cGCAUAgacGCC-CGGCgCAGCGUGGAgcGGCg -3'
miRNA:   3'- uCGUAU---CGGaGCCG-GUCGCAUCU--CCG- -5'
6492 5' -57.4 NC_001847.1 + 12937 0.77 0.26196
Target:  5'- gGGCAcccGGCCcCGGCUAGUGUGGcGGCg -3'
miRNA:   3'- -UCGUa--UCGGaGCCGGUCGCAUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 77824 0.76 0.294946
Target:  5'- cGCGUgccGGCCUuuuugcgccacUGGCCAGCGcgcUGGGGGCg -3'
miRNA:   3'- uCGUA---UCGGA-----------GCCGGUCGC---AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 27499 0.75 0.309018
Target:  5'- cGGCAgaGGCCUCGGCCGccgccGCGgcGGcGGCg -3'
miRNA:   3'- -UCGUa-UCGGAGCCGGU-----CGCauCU-CCG- -5'
6492 5' -57.4 NC_001847.1 + 74289 0.75 0.309018
Target:  5'- cGCGcUGGCCUCGGCgGGCGcGGAGcuGCu -3'
miRNA:   3'- uCGU-AUCGGAGCCGgUCGCaUCUC--CG- -5'
6492 5' -57.4 NC_001847.1 + 8480 0.75 0.323597
Target:  5'- gGGC--GGCgCUCGGCCGGgGgcGGGGCc -3'
miRNA:   3'- -UCGuaUCG-GAGCCGGUCgCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 130795 0.75 0.323597
Target:  5'- aGGC--GGCCgCGGCCGGgGcGGAGGCg -3'
miRNA:   3'- -UCGuaUCGGaGCCGGUCgCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 111293 0.75 0.323597
Target:  5'- gGGC--GGCgCUCGGCCGGgGgcGGGGCc -3'
miRNA:   3'- -UCGuaUCG-GAGCCGGUCgCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 53079 0.75 0.323597
Target:  5'- cGCcgAGCC-CGGCuCAGCGUucggcGGGGCg -3'
miRNA:   3'- uCGuaUCGGaGCCG-GUCGCAu----CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 27982 0.75 0.323597
Target:  5'- aGGC--GGCCgCGGCCGGgGcGGAGGCg -3'
miRNA:   3'- -UCGuaUCGGaGCCGGUCgCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 54497 0.74 0.346414
Target:  5'- cGGCGgcGCCggGGCCGGgGUGGGGGg -3'
miRNA:   3'- -UCGUauCGGagCCGGUCgCAUCUCCg -5'
6492 5' -57.4 NC_001847.1 + 63546 0.74 0.354271
Target:  5'- uGGCGccGCCUgGGCCGGCGccgGGcGGCa -3'
miRNA:   3'- -UCGUauCGGAgCCGGUCGCa--UCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 32887 0.74 0.362254
Target:  5'- cGGCGaGGCCUCgggGGCCGGCGgggaagccGGGGCc -3'
miRNA:   3'- -UCGUaUCGGAG---CCGGUCGCau------CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 17997 0.74 0.37036
Target:  5'- uGGCGUAGCgUCggGGCUguugGGCGUGGGGGg -3'
miRNA:   3'- -UCGUAUCGgAG--CCGG----UCGCAUCUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.