miRNA display CGI


Results 21 - 40 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 105669 0.74 0.37036
Target:  5'- gAGCGUGccGCCUCGGCC-GCG-GGcGGCg -3'
miRNA:   3'- -UCGUAU--CGGAGCCGGuCGCaUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 66485 0.74 0.386942
Target:  5'- cGGCAcgucgUGcGUgUCGGCCAGCGgcgcggUGGAGGCg -3'
miRNA:   3'- -UCGU-----AU-CGgAGCCGGUCGC------AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 99763 0.73 0.395414
Target:  5'- cGGCAgugAGCCgccgCGGCUuugGGCG-GGGGGCa -3'
miRNA:   3'- -UCGUa--UCGGa---GCCGG---UCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 40329 0.73 0.404005
Target:  5'- aAGCGgcugcGGcCCUCGGCgAccuugaggugcGCGUGGAGGCg -3'
miRNA:   3'- -UCGUa----UC-GGAGCCGgU-----------CGCAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 48841 0.73 0.412712
Target:  5'- cGCGggggcGCCUCGGCCGcGCGgcgcGAGGUa -3'
miRNA:   3'- uCGUau---CGGAGCCGGU-CGCau--CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 134022 0.73 0.421535
Target:  5'- gGGC--GGUCUC-GCCAGCGUcgcAGGGGCa -3'
miRNA:   3'- -UCGuaUCGGAGcCGGUCGCA---UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 96905 0.73 0.421535
Target:  5'- cGCGcgGGaCUggCGGCC-GCGUAGAGGCg -3'
miRNA:   3'- uCGUa-UC-GGa-GCCGGuCGCAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 22392 0.73 0.430471
Target:  5'- aGGCGcccgGGCCgCGGCgAGCGUgcucguccgcGGGGGCg -3'
miRNA:   3'- -UCGUa---UCGGaGCCGgUCGCA----------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 15359 0.73 0.430471
Target:  5'- uGGCuucgAGgCUCGGCCAGCcuucGGGGCg -3'
miRNA:   3'- -UCGua--UCgGAGCCGGUCGcau-CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 125205 0.73 0.430471
Target:  5'- aGGCGcccgGGCCgCGGCgAGCGUgcucguccgcGGGGGCg -3'
miRNA:   3'- -UCGUa---UCGGaGCCGgUCGCA----------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 31693 0.72 0.439516
Target:  5'- uGUcgGGCCUCGGg-GGCGgggGGAGGCg -3'
miRNA:   3'- uCGuaUCGGAGCCggUCGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 134506 0.72 0.439516
Target:  5'- uGUcgGGCCUCGGg-GGCGgggGGAGGCg -3'
miRNA:   3'- uCGuaUCGGAGCCggUCGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 102092 0.72 0.439516
Target:  5'- cGCAgcGCCUCGGCCGcgagcGCGUccagcucggcggAGAGGg -3'
miRNA:   3'- uCGUauCGGAGCCGGU-----CGCA------------UCUCCg -5'
6492 5' -57.4 NC_001847.1 + 132408 0.72 0.439516
Target:  5'- cGCcgGGCCgggGGCCGGUggaaGUGGAGGUg -3'
miRNA:   3'- uCGuaUCGGag-CCGGUCG----CAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 101159 0.72 0.439516
Target:  5'- gGGCcggGGCCggGGCCGGgGUcGGGGCg -3'
miRNA:   3'- -UCGua-UCGGagCCGGUCgCAuCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 29595 0.72 0.439516
Target:  5'- cGCcgGGCCgggGGCCGGUggaaGUGGAGGUg -3'
miRNA:   3'- uCGuaUCGGag-CCGGUCG----CAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 2106 0.72 0.44867
Target:  5'- cGGCGgcgGGCCgcgaucUCGGCCAGCGccucGGGGUc -3'
miRNA:   3'- -UCGUa--UCGG------AGCCGGUCGCau--CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 46913 0.72 0.44867
Target:  5'- cGCGccGGCCUCGGCUc-CGgcGAGGCg -3'
miRNA:   3'- uCGUa-UCGGAGCCGGucGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 104919 0.72 0.44867
Target:  5'- cGGCGgcgGGCCgcgaucUCGGCCAGCGccucGGGGUc -3'
miRNA:   3'- -UCGUa--UCGG------AGCCGGUCGCau--CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 36955 0.72 0.44867
Target:  5'- gAGCGggGGCUgCGGCCAGCGc--GGGCg -3'
miRNA:   3'- -UCGUa-UCGGaGCCGGUCGCaucUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.