miRNA display CGI


Results 21 - 40 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 5806 0.66 0.795845
Target:  5'- aAGCAUGGCCgaacgccccCGGCCccGCGcccGGcAGGCc -3'
miRNA:   3'- -UCGUAUCGGa--------GCCGGu-CGCa--UC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 5973 0.78 0.199989
Target:  5'- cGCGUaAGCCUCGGCUuuGCG-GGGGGCa -3'
miRNA:   3'- uCGUA-UCGGAGCCGGu-CGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 6367 0.68 0.668284
Target:  5'- gGGCGUAGCCgcugCGGC-AGC--AGaAGGCg -3'
miRNA:   3'- -UCGUAUCGGa---GCCGgUCGcaUC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 6676 0.67 0.777363
Target:  5'- aGGCuaGGCCgcggCGGCCGGCc---GGGCg -3'
miRNA:   3'- -UCGuaUCGGa---GCCGGUCGcaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 6748 0.69 0.647706
Target:  5'- gGGCGUcGUCUgcggugCGGCCGGUGc-GAGGCg -3'
miRNA:   3'- -UCGUAuCGGA------GCCGGUCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 7761 0.66 0.804865
Target:  5'- gGGCA-AGCCcgaCGGCCguuGGUGccGAGGCu -3'
miRNA:   3'- -UCGUaUCGGa--GCCGG---UCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 8053 0.66 0.830937
Target:  5'- -cCAaAGCCgcgCGGCCcGCGcgcagagGGGGGCa -3'
miRNA:   3'- ucGUaUCGGa--GCCGGuCGCa------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 8384 0.66 0.830937
Target:  5'- cAGCGUgGGCgUCuGCC-GCGUAGgcuacGGGCa -3'
miRNA:   3'- -UCGUA-UCGgAGcCGGuCGCAUC-----UCCG- -5'
6492 5' -57.4 NC_001847.1 + 8460 0.7 0.584906
Target:  5'- uGGCAUGGCaauaUCGuacCCGGCGUccucgucgcguuuGGGGGCg -3'
miRNA:   3'- -UCGUAUCGg---AGCc--GGUCGCA-------------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 8480 0.75 0.323597
Target:  5'- gGGC--GGCgCUCGGCCGGgGgcGGGGCc -3'
miRNA:   3'- -UCGuaUCG-GAGCCGGUCgCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 8607 0.7 0.56553
Target:  5'- gGGC--GGCgCUCGGCCGGgGgcGGGGg -3'
miRNA:   3'- -UCGuaUCG-GAGCCGGUCgCauCUCCg -5'
6492 5' -57.4 NC_001847.1 + 10129 0.66 0.813726
Target:  5'- cGGCGagcgGGCC-CGGCCguAGCGcgagcgGGAGGg -3'
miRNA:   3'- -UCGUa---UCGGaGCCGG--UCGCa-----UCUCCg -5'
6492 5' -57.4 NC_001847.1 + 10704 0.66 0.812848
Target:  5'- gGGCGcGGCCcgCGccggccaagcgccGCCAGCGaguuuagGGGGGCg -3'
miRNA:   3'- -UCGUaUCGGa-GC-------------CGGUCGCa------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 10718 0.72 0.457927
Target:  5'- gAGgAgGGCCUCccggaguauguGGCCGGCGUAcAGGCg -3'
miRNA:   3'- -UCgUaUCGGAG-----------CCGGUCGCAUcUCCG- -5'
6492 5' -57.4 NC_001847.1 + 10854 0.72 0.476742
Target:  5'- cGCGUGGCCgaggcgCGGCgGGCGc--GGGCg -3'
miRNA:   3'- uCGUAUCGGa-----GCCGgUCGCaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 12464 0.71 0.545319
Target:  5'- cGGCGgAGCCUccgCGGCUucccGCGUGGcGGCg -3'
miRNA:   3'- -UCGUaUCGGA---GCCGGu---CGCAUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 12937 0.77 0.26196
Target:  5'- gGGCAcccGGCCcCGGCUAGUGUGGcGGCg -3'
miRNA:   3'- -UCGUa--UCGGaGCCGGUCGCAUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 13139 0.69 0.616766
Target:  5'- cGCGccGCCUgccgCGGCCGGCGguuGGGCu -3'
miRNA:   3'- uCGUauCGGA----GCCGGUCGCaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 13319 0.66 0.82242
Target:  5'- aGGCAgacgGGCUcCGGCacgGGCGgcgAGcAGGCg -3'
miRNA:   3'- -UCGUa---UCGGaGCCGg--UCGCa--UC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 13798 0.71 0.545319
Target:  5'- uGCGUAGCC--GGCgCAGCGguguacGGGGGCc -3'
miRNA:   3'- uCGUAUCGGagCCG-GUCGCa-----UCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.