miRNA display CGI


Results 21 - 40 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 45288 0.66 0.82242
Target:  5'- cGGCGagccGGCCUUGcaGCCGGCGgucGcAGGCg -3'
miRNA:   3'- -UCGUa---UCGGAGC--CGGUCGCau-C-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 2277 0.66 0.82242
Target:  5'- cGGCGgaAGCCgccGUCGGCGgcGGGGCc -3'
miRNA:   3'- -UCGUa-UCGGagcCGGUCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 13319 0.66 0.82242
Target:  5'- aGGCAgacgGGCUcCGGCacgGGCGgcgAGcAGGCg -3'
miRNA:   3'- -UCGUa---UCGGaGCCGg--UCGCa--UC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 37965 0.66 0.82242
Target:  5'- uAGcCAUGGCCcgcgugCGcGCCGGCaGUgucuuuggGGAGGCc -3'
miRNA:   3'- -UC-GUAUCGGa-----GC-CGGUCG-CA--------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 83121 0.66 0.82242
Target:  5'- cGCGUAGCaccucCUCGGCggccgccgCGGCGUcGGGcGCg -3'
miRNA:   3'- uCGUAUCG-----GAGCCG--------GUCGCAuCUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 133111 0.66 0.82242
Target:  5'- -uCGUGGCCaCGGCCGGCGccgugcUGGAaaaccugcGGCu -3'
miRNA:   3'- ucGUAUCGGaGCCGGUCGC------AUCU--------CCG- -5'
6492 5' -57.4 NC_001847.1 + 98285 0.66 0.82242
Target:  5'- cGCGUAGagCUCGGCCGcCGccGAGcGCa -3'
miRNA:   3'- uCGUAUCg-GAGCCGGUcGCauCUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 14135 0.66 0.82242
Target:  5'- gGGCGU-GUCUcCGGCCggcugcgcagcGGCGgccGGGGCg -3'
miRNA:   3'- -UCGUAuCGGA-GCCGG-----------UCGCau-CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 58191 0.66 0.82242
Target:  5'- aAGCc--GCCuUCGGCCAGCaGgcGcuccGGGCg -3'
miRNA:   3'- -UCGuauCGG-AGCCGGUCG-CauC----UCCG- -5'
6492 5' -57.4 NC_001847.1 + 31426 0.66 0.813726
Target:  5'- cGGCG-GGCggCGGCCGGCGgccGcGGCg -3'
miRNA:   3'- -UCGUaUCGgaGCCGGUCGCau-CuCCG- -5'
6492 5' -57.4 NC_001847.1 + 58583 0.66 0.813726
Target:  5'- gGGCcgGGCCgcCGGCU-GCGU--GGGCa -3'
miRNA:   3'- -UCGuaUCGGa-GCCGGuCGCAucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 100388 0.66 0.813726
Target:  5'- cGCGcAGCCgcgccagcUCGGCC-GCGUcGaAGGCg -3'
miRNA:   3'- uCGUaUCGG--------AGCCGGuCGCAuC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 66468 0.66 0.813726
Target:  5'- gGGCAcggUAGUCUCagucGCCcgcaggGGCGgGGAGGCg -3'
miRNA:   3'- -UCGU---AUCGGAGc---CGG------UCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 10129 0.66 0.813726
Target:  5'- cGGCGagcgGGCC-CGGCCguAGCGcgagcgGGAGGg -3'
miRNA:   3'- -UCGUa---UCGGaGCCGG--UCGCa-----UCUCCg -5'
6492 5' -57.4 NC_001847.1 + 15001 0.66 0.813726
Target:  5'- aAGCGcc-CCUCGGCC-GCGguGGGGCc -3'
miRNA:   3'- -UCGUaucGGAGCCGGuCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 134239 0.66 0.813726
Target:  5'- cGGCG-GGCggCGGCCGGCGgccGcGGCg -3'
miRNA:   3'- -UCGUaUCGgaGCCGGUCGCau-CuCCG- -5'
6492 5' -57.4 NC_001847.1 + 54083 0.66 0.813726
Target:  5'- cGCc--GCCUUcGCCGGCaaccUAGAGGCg -3'
miRNA:   3'- uCGuauCGGAGcCGGUCGc---AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 1140 0.66 0.813726
Target:  5'- cGGCGgcGCCUCGGCgcgcggcuccggCAGCGcGGccGCg -3'
miRNA:   3'- -UCGUauCGGAGCCG------------GUCGCaUCucCG- -5'
6492 5' -57.4 NC_001847.1 + 103953 0.66 0.813726
Target:  5'- cGGCGgcGCCUCGGCgcgcggcuccggCAGCGcGGccGCg -3'
miRNA:   3'- -UCGUauCGGAGCCG------------GUCGCaUCucCG- -5'
6492 5' -57.4 NC_001847.1 + 32669 0.66 0.813726
Target:  5'- uGCcUGGCCugcaUCcGCCGGUGgcuggAGGGGCg -3'
miRNA:   3'- uCGuAUCGG----AGcCGGUCGCa----UCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.