Results 41 - 60 of 300 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6492 | 5' | -57.4 | NC_001847.1 | + | 113517 | 0.66 | 0.812848 |
Target: 5'- gGGCGcGGCCcgCGccggccaagcgccGCCAGCGaguuuagGGGGGCg -3' miRNA: 3'- -UCGUaUCGGa-GC-------------CGGUCGCa------UCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 10704 | 0.66 | 0.812848 |
Target: 5'- gGGCGcGGCCcgCGccggccaagcgccGCCAGCGaguuuagGGGGGCg -3' miRNA: 3'- -UCGUaUCGGa-GC-------------CGGUCGCa------UCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 116111 | 0.66 | 0.810201 |
Target: 5'- cGCcgGGCCU--GCCGGCGgggucacgcgcgaAGAGGCc -3' miRNA: 3'- uCGuaUCGGAgcCGGUCGCa------------UCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 52892 | 0.66 | 0.810201 |
Target: 5'- aGGCgAUGGCCaguccuagguccgCGGgCAGCGgcucGGGGCg -3' miRNA: 3'- -UCG-UAUCGGa------------GCCgGUCGCau--CUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 26068 | 0.66 | 0.808429 |
Target: 5'- aGGCAaccugGGCC-CGGCagcagagauauuuaaCGGCGguuugAGGGGCg -3' miRNA: 3'- -UCGUa----UCGGaGCCG---------------GUCGCa----UCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 74162 | 0.66 | 0.804865 |
Target: 5'- uGGCGgcGCCUC--UCGGCGUGG-GGCc -3' miRNA: 3'- -UCGUauCGGAGccGGUCGCAUCuCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 96243 | 0.66 | 0.804865 |
Target: 5'- gGGCcggAGUCagGGCCGGCGgcGGcaauGGCg -3' miRNA: 3'- -UCGua-UCGGagCCGGUCGCauCU----CCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 82894 | 0.66 | 0.804865 |
Target: 5'- cGCAgccaAGCCgCGGCgcgCGGCGcccGGGGGCu -3' miRNA: 3'- uCGUa---UCGGaGCCG---GUCGCa--UCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 7761 | 0.66 | 0.804865 |
Target: 5'- gGGCA-AGCCcgaCGGCCguuGGUGccGAGGCu -3' miRNA: 3'- -UCGUaUCGGa--GCCGG---UCGCauCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 62473 | 0.66 | 0.804865 |
Target: 5'- cAGCAgGGCCggggucgcCGGCgGGCGgccgcggGGuGGCg -3' miRNA: 3'- -UCGUaUCGGa-------GCCGgUCGCa------UCuCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 101082 | 0.66 | 0.804865 |
Target: 5'- cGCGggGGCCg-GGUCGGCGgGGcGGGCg -3' miRNA: 3'- uCGUa-UCGGagCCGGUCGCaUC-UCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 43070 | 0.66 | 0.804865 |
Target: 5'- cGGCAacgcgGGCgCUgcUGGCuCGGCGgcGGAGGCg -3' miRNA: 3'- -UCGUa----UCG-GA--GCCG-GUCGCa-UCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 34040 | 0.66 | 0.804865 |
Target: 5'- aGGCGaugGGCCccgCGGCgCGcGCGUuuuucgAGGGGCa -3' miRNA: 3'- -UCGUa--UCGGa--GCCG-GU-CGCA------UCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 17259 | 0.66 | 0.804865 |
Target: 5'- cGGgGUAGCCguugCGGaaCCAgugcaggcGCGUGGAGcGCg -3' miRNA: 3'- -UCgUAUCGGa---GCC--GGU--------CGCAUCUC-CG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 120928 | 0.66 | 0.804865 |
Target: 5'- gGGCGgGGCgggCGcGCgGGCGUGGuGGCu -3' miRNA: 3'- -UCGUaUCGga-GC-CGgUCGCAUCuCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 119153 | 0.66 | 0.80397 |
Target: 5'- cGGC---GCCgCGGCCgccgcggGGCGgcGGGGCa -3' miRNA: 3'- -UCGuauCGGaGCCGG-------UCGCauCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 119213 | 0.66 | 0.80397 |
Target: 5'- cGGC---GCCgCGGCCaccgcggGGCGgcGGGGCa -3' miRNA: 3'- -UCGuauCGGaGCCGG-------UCGCauCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 27734 | 0.66 | 0.795845 |
Target: 5'- cGGCGgaAGCCgcggCGGCgGuuGCGgcgGGGGGCu -3' miRNA: 3'- -UCGUa-UCGGa---GCCGgU--CGCa--UCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 88840 | 0.66 | 0.795845 |
Target: 5'- cGCucGGCgCUaCGGCUGGcCGUAGAGGa -3' miRNA: 3'- uCGuaUCG-GA-GCCGGUC-GCAUCUCCg -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 58815 | 0.66 | 0.795845 |
Target: 5'- cGCcgGcGCCUgGGCCGGUGcgAGGgucGGCa -3' miRNA: 3'- uCGuaU-CGGAgCCGGUCGCa-UCU---CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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