Results 1 - 20 of 300 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6492 | 5' | -57.4 | NC_001847.1 | + | 134506 | 0.72 | 0.439516 |
Target: 5'- uGUcgGGCCUCGGg-GGCGgggGGAGGCg -3' miRNA: 3'- uCGuaUCGGAGCCggUCGCa--UCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 63546 | 0.74 | 0.354271 |
Target: 5'- uGGCGccGCCUgGGCCGGCGccgGGcGGCa -3' miRNA: 3'- -UCGUauCGGAgCCGGUCGCa--UCuCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 17997 | 0.74 | 0.37036 |
Target: 5'- uGGCGUAGCgUCggGGCUguugGGCGUGGGGGg -3' miRNA: 3'- -UCGUAUCGgAG--CCGG----UCGCAUCUCCg -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 66485 | 0.74 | 0.386942 |
Target: 5'- cGGCAcgucgUGcGUgUCGGCCAGCGgcgcggUGGAGGCg -3' miRNA: 3'- -UCGU-----AU-CGgAGCCGGUCGC------AUCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 99763 | 0.73 | 0.395414 |
Target: 5'- cGGCAgugAGCCgccgCGGCUuugGGCG-GGGGGCa -3' miRNA: 3'- -UCGUa--UCGGa---GCCGG---UCGCaUCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 48841 | 0.73 | 0.412712 |
Target: 5'- cGCGggggcGCCUCGGCCGcGCGgcgcGAGGUa -3' miRNA: 3'- uCGUau---CGGAGCCGGU-CGCau--CUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 96905 | 0.73 | 0.421535 |
Target: 5'- cGCGcgGGaCUggCGGCC-GCGUAGAGGCg -3' miRNA: 3'- uCGUa-UC-GGa-GCCGGuCGCAUCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 125205 | 0.73 | 0.430471 |
Target: 5'- aGGCGcccgGGCCgCGGCgAGCGUgcucguccgcGGGGGCg -3' miRNA: 3'- -UCGUa---UCGGaGCCGgUCGCA----------UCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 132408 | 0.72 | 0.439516 |
Target: 5'- cGCcgGGCCgggGGCCGGUggaaGUGGAGGUg -3' miRNA: 3'- uCGuaUCGGag-CCGGUCG----CAUCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 54497 | 0.74 | 0.346414 |
Target: 5'- cGGCGgcGCCggGGCCGGgGUGGGGGg -3' miRNA: 3'- -UCGUauCGGagCCGGUCgCAUCUCCg -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 130795 | 0.75 | 0.323597 |
Target: 5'- aGGC--GGCCgCGGCCGGgGcGGAGGCg -3' miRNA: 3'- -UCGuaUCGGaGCCGGUCgCaUCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 111293 | 0.75 | 0.323597 |
Target: 5'- gGGC--GGCgCUCGGCCGGgGgcGGGGCc -3' miRNA: 3'- -UCGuaUCG-GAGCCGGUCgCauCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 5973 | 0.78 | 0.199989 |
Target: 5'- cGCGUaAGCCUCGGCUuuGCG-GGGGGCa -3' miRNA: 3'- uCGUA-UCGGAGCCGGu-CGCaUCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 71077 | 0.78 | 0.20505 |
Target: 5'- uGGC--GGCgCUCGGCCGGCGcggccAGAGGCg -3' miRNA: 3'- -UCGuaUCG-GAGCCGGUCGCa----UCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 84764 | 0.78 | 0.215504 |
Target: 5'- gAGCAUGGCCaCGGCCAGC--AG-GGCg -3' miRNA: 3'- -UCGUAUCGGaGCCGGUCGcaUCuCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 12937 | 0.77 | 0.26196 |
Target: 5'- gGGCAcccGGCCcCGGCUAGUGUGGcGGCg -3' miRNA: 3'- -UCGUa--UCGGaGCCGGUCGCAUCuCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 77824 | 0.76 | 0.294946 |
Target: 5'- cGCGUgccGGCCUuuuugcgccacUGGCCAGCGcgcUGGGGGCg -3' miRNA: 3'- uCGUA---UCGGA-----------GCCGGUCGC---AUCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 74289 | 0.75 | 0.309018 |
Target: 5'- cGCGcUGGCCUCGGCgGGCGcGGAGcuGCu -3' miRNA: 3'- uCGU-AUCGGAGCCGgUCGCaUCUC--CG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 27499 | 0.75 | 0.309018 |
Target: 5'- cGGCAgaGGCCUCGGCCGccgccGCGgcGGcGGCg -3' miRNA: 3'- -UCGUa-UCGGAGCCGGU-----CGCauCU-CCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 53079 | 0.75 | 0.323597 |
Target: 5'- cGCcgAGCC-CGGCuCAGCGUucggcGGGGCg -3' miRNA: 3'- uCGuaUCGGaGCCG-GUCGCAu----CUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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