Results 1 - 20 of 300 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6492 | 5' | -57.4 | NC_001847.1 | + | 29895 | 0.66 | 0.830937 |
Target: 5'- aGGCGgcGGCCcugcCGGCCGccGCG-GGGGGCc -3' miRNA: 3'- -UCGUa-UCGGa---GCCGGU--CGCaUCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 10704 | 0.66 | 0.812848 |
Target: 5'- gGGCGcGGCCcgCGccggccaagcgccGCCAGCGaguuuagGGGGGCg -3' miRNA: 3'- -UCGUaUCGGa-GC-------------CGGUCGCa------UCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 120928 | 0.66 | 0.804865 |
Target: 5'- gGGCGgGGCgggCGcGCgGGCGUGGuGGCu -3' miRNA: 3'- -UCGUaUCGga-GC-CGgUCGCAUCuCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 18865 | 1.1 | 0.001354 |
Target: 5'- uAGCAUAGCCUCGGCCAGCGUAGAGGCc -3' miRNA: 3'- -UCGUAUCGGAGCCGGUCGCAUCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 58191 | 0.66 | 0.82242 |
Target: 5'- aAGCc--GCCuUCGGCCAGCaGgcGcuccGGGCg -3' miRNA: 3'- -UCGuauCGG-AGCCGGUCG-CauC----UCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 14135 | 0.66 | 0.82242 |
Target: 5'- gGGCGU-GUCUcCGGCCggcugcgcagcGGCGgccGGGGCg -3' miRNA: 3'- -UCGUAuCGGA-GCCGG-----------UCGCau-CUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 98285 | 0.66 | 0.82242 |
Target: 5'- cGCGUAGagCUCGGCCGcCGccGAGcGCa -3' miRNA: 3'- uCGUAUCg-GAGCCGGUcGCauCUC-CG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 83121 | 0.66 | 0.82242 |
Target: 5'- cGCGUAGCaccucCUCGGCggccgccgCGGCGUcGGGcGCg -3' miRNA: 3'- uCGUAUCG-----GAGCCG--------GUCGCAuCUC-CG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 100388 | 0.66 | 0.813726 |
Target: 5'- cGCGcAGCCgcgccagcUCGGCC-GCGUcGaAGGCg -3' miRNA: 3'- uCGUaUCGG--------AGCCGGuCGCAuC-UCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 1140 | 0.66 | 0.813726 |
Target: 5'- cGGCGgcGCCUCGGCgcgcggcuccggCAGCGcGGccGCg -3' miRNA: 3'- -UCGUauCGGAGCCG------------GUCGCaUCucCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 58583 | 0.66 | 0.813726 |
Target: 5'- gGGCcgGGCCgcCGGCU-GCGU--GGGCa -3' miRNA: 3'- -UCGuaUCGGa-GCCGGuCGCAucUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 13319 | 0.66 | 0.82242 |
Target: 5'- aGGCAgacgGGCUcCGGCacgGGCGgcgAGcAGGCg -3' miRNA: 3'- -UCGUa---UCGGaGCCGg--UCGCa--UC-UCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 116112 | 0.66 | 0.830937 |
Target: 5'- gGGCugcuucucGGCCuuUCGGCCGGgCGcuGGGGCg -3' miRNA: 3'- -UCGua------UCGG--AGCCGGUC-GCauCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 32669 | 0.66 | 0.813726 |
Target: 5'- uGCcUGGCCugcaUCcGCCGGUGgcuggAGGGGCg -3' miRNA: 3'- uCGuAUCGG----AGcCGGUCGCa----UCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 876 | 0.66 | 0.830937 |
Target: 5'- cGCGcGGCggCGGCCcGCGccGGGGCc -3' miRNA: 3'- uCGUaUCGgaGCCGGuCGCauCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 37965 | 0.66 | 0.82242 |
Target: 5'- uAGcCAUGGCCcgcgugCGcGCCGGCaGUgucuuuggGGAGGCc -3' miRNA: 3'- -UC-GUAUCGGa-----GC-CGGUCG-CA--------UCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 31426 | 0.66 | 0.813726 |
Target: 5'- cGGCG-GGCggCGGCCGGCGgccGcGGCg -3' miRNA: 3'- -UCGUaUCGgaGCCGGUCGCau-CuCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 52892 | 0.66 | 0.810201 |
Target: 5'- aGGCgAUGGCCaguccuagguccgCGGgCAGCGgcucGGGGCg -3' miRNA: 3'- -UCG-UAUCGGa------------GCCgGUCGCau--CUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 133111 | 0.66 | 0.82242 |
Target: 5'- -uCGUGGCCaCGGCCGGCGccgugcUGGAaaaccugcGGCu -3' miRNA: 3'- ucGUAUCGGaGCCGGUCGC------AUCU--------CCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 2277 | 0.66 | 0.82242 |
Target: 5'- cGGCGgaAGCCgccGUCGGCGgcGGGGCc -3' miRNA: 3'- -UCGUa-UCGGagcCGGUCGCauCUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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