miRNA display CGI


Results 61 - 80 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 5806 0.66 0.795845
Target:  5'- aAGCAUGGCCgaacgccccCGGCCccGCGcccGGcAGGCc -3'
miRNA:   3'- -UCGUAUCGGa--------GCCGGu-CGCa--UC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 121772 0.66 0.795845
Target:  5'- cGCGUAGCgCUCauuuGCC-GUGUAGccGGGCg -3'
miRNA:   3'- uCGUAUCG-GAGc---CGGuCGCAUC--UCCG- -5'
6492 5' -57.4 NC_001847.1 + 88840 0.66 0.795845
Target:  5'- cGCucGGCgCUaCGGCUGGcCGUAGAGGa -3'
miRNA:   3'- uCGuaUCG-GA-GCCGGUC-GCAUCUCCg -5'
6492 5' -57.4 NC_001847.1 + 58815 0.66 0.795845
Target:  5'- cGCcgGcGCCUgGGCCGGUGcgAGGgucGGCa -3'
miRNA:   3'- uCGuaU-CGGAgCCGGUCGCa-UCU---CCG- -5'
6492 5' -57.4 NC_001847.1 + 114087 0.66 0.795845
Target:  5'- cGCcccagGGCCUCagGGCCGGgGgucucGGGGCa -3'
miRNA:   3'- uCGua---UCGGAG--CCGGUCgCau---CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 27734 0.66 0.795845
Target:  5'- cGGCGgaAGCCgcggCGGCgGuuGCGgcgGGGGGCu -3'
miRNA:   3'- -UCGUa-UCGGa---GCCGgU--CGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 14203 0.66 0.795845
Target:  5'- cGGCGgGGCUggcggucaGGCCGGCc-GGGGGCg -3'
miRNA:   3'- -UCGUaUCGGag------CCGGUCGcaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 63775 0.66 0.794935
Target:  5'- gGGCAUcGCCUgcaUGGCCGGCaucaccuGUGGuGGGUu -3'
miRNA:   3'- -UCGUAuCGGA---GCCGGUCG-------CAUC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 42085 0.66 0.786675
Target:  5'- cGCAUcGGCCUCGcgguGCCGGCaccGUccaggcgccGGGGGCc -3'
miRNA:   3'- uCGUA-UCGGAGC----CGGUCG---CA---------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 5209 0.66 0.786675
Target:  5'- cGGCucucucGCCgcggCGGCCGGCG---GGGCg -3'
miRNA:   3'- -UCGuau---CGGa---GCCGGUCGCaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 79575 0.66 0.786675
Target:  5'- cGCcgGGCUcgCGGCCucuucgggcgggGGCGccGGGGGCg -3'
miRNA:   3'- uCGuaUCGGa-GCCGG------------UCGCa-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 32923 0.66 0.786675
Target:  5'- cGCGgacgGGaggaGGCCGGCGgcGGGGCc -3'
miRNA:   3'- uCGUa---UCggagCCGGUCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 108022 0.66 0.786675
Target:  5'- cGGCucucucGCCgcggCGGCCGGCG---GGGCg -3'
miRNA:   3'- -UCGuau---CGGa---GCCGGUCGCaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 44242 0.66 0.786675
Target:  5'- gGGCGUggGGCUgagCGcGCCGGCGacuGGGCa -3'
miRNA:   3'- -UCGUA--UCGGa--GC-CGGUCGCaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 24743 0.66 0.786675
Target:  5'- aGGCcgGGCCgugCaGCCGGCu--GAGGUg -3'
miRNA:   3'- -UCGuaUCGGa--GcCGGUCGcauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 43236 0.66 0.786675
Target:  5'- uGGCGgugggGGCgCgcgggCGGCgCGGCGcccgGGGGGCa -3'
miRNA:   3'- -UCGUa----UCG-Ga----GCCG-GUCGCa---UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 88290 0.66 0.786675
Target:  5'- uGCAcUGGCCUUGcGCC-GCG--GGGGCg -3'
miRNA:   3'- uCGU-AUCGGAGC-CGGuCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 24389 0.66 0.78575
Target:  5'- uAGCGUugacaaaaauggcGGCCguggCGGCCGcCGUGGAcagagcGGCa -3'
miRNA:   3'- -UCGUA-------------UCGGa---GCCGGUcGCAUCU------CCG- -5'
6492 5' -57.4 NC_001847.1 + 31159 0.67 0.781105
Target:  5'- cGGCgGUGGCCUucugcgCGGCCGcgcugccggagccgcGCGccGAGGCg -3'
miRNA:   3'- -UCG-UAUCGGA------GCCGGU---------------CGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 133972 0.67 0.781105
Target:  5'- cGGCgGUGGCCUucugcgCGGCCGcgcugccggagccgcGCGccGAGGCg -3'
miRNA:   3'- -UCG-UAUCGGA------GCCGGU---------------CGCauCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.