miRNA display CGI


Results 81 - 100 of 356 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 5' -60.4 NC_001847.1 + 116111 0.67 0.662153
Target:  5'- cGGGCUGCUUCucGGCCuuucggccggGCGCUGggGc -3'
miRNA:   3'- -CCCGAUGGGGcuCCGG----------CGUGGCuuCu -5'
6493 5' -60.4 NC_001847.1 + 76856 0.67 0.662153
Target:  5'- cGGCcGCCgCCGucGCCGCgGCCGAGc- -3'
miRNA:   3'- cCCGaUGG-GGCucCGGCG-UGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 75475 0.67 0.662153
Target:  5'- cGGCgacaaagagGCCgUCGAGGCgGCGCCGGu-- -3'
miRNA:   3'- cCCGa--------UGG-GGCUCCGgCGUGGCUucu -5'
6493 5' -60.4 NC_001847.1 + 105061 0.67 0.662153
Target:  5'- cGGGCgugugguaguCCCCG-GGCgGCACgCGgcGGa -3'
miRNA:   3'- -CCCGau--------GGGGCuCCGgCGUG-GCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 105824 0.67 0.662153
Target:  5'- -cGCUccACCgCGucgcGGGCCGCGCCGAGc- -3'
miRNA:   3'- ccCGA--UGGgGC----UCCGGCGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 116385 0.67 0.662153
Target:  5'- -cGCUACCgCGAGGaccugcacaCGCACCucuGGAGAa -3'
miRNA:   3'- ccCGAUGGgGCUCCg--------GCGUGG---CUUCU- -5'
6493 5' -60.4 NC_001847.1 + 118298 0.67 0.662153
Target:  5'- -cGCUcGCCUCGAGcGCCGCcCCGAu-- -3'
miRNA:   3'- ccCGA-UGGGGCUC-CGGCGuGGCUucu -5'
6493 5' -60.4 NC_001847.1 + 3011 0.67 0.662153
Target:  5'- -cGCUccACCgCGucgcGGGCCGCGCCGAGc- -3'
miRNA:   3'- ccCGA--UGGgGC----UCCGGCGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 103112 0.67 0.652221
Target:  5'- cGGGCgccguCCCCGc-GCCcCGCCGGAGc -3'
miRNA:   3'- -CCCGau---GGGGCucCGGcGUGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 299 0.67 0.652221
Target:  5'- cGGGCgccguCCCCGc-GCCcCGCCGGAGc -3'
miRNA:   3'- -CCCGau---GGGGCucCGGcGUGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 119757 0.67 0.652221
Target:  5'- cGGCccaGCCCCGAcGCCGaccgccCCGAAGGc -3'
miRNA:   3'- cCCGa--UGGGGCUcCGGCgu----GGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 38481 0.67 0.652221
Target:  5'- aGGauaGCCUCGAGGaCGuCGCCGggGGg -3'
miRNA:   3'- cCCga-UGGGGCUCCgGC-GUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 52072 0.67 0.652221
Target:  5'- uGGCUGCCgUGuugcgcucuucGGCCGCGCCGcGGc -3'
miRNA:   3'- cCCGAUGGgGCu----------CCGGCGUGGCuUCu -5'
6493 5' -60.4 NC_001847.1 + 18510 0.67 0.642273
Target:  5'- cGGCUGCC--GAGGCCaGCGCUGcGGGc -3'
miRNA:   3'- cCCGAUGGggCUCCGG-CGUGGCuUCU- -5'
6493 5' -60.4 NC_001847.1 + 15988 0.67 0.642273
Target:  5'- -cGCcGCCCCGcggcGGCCGCggcGCCGAcGAg -3'
miRNA:   3'- ccCGaUGGGGCu---CCGGCG---UGGCUuCU- -5'
6493 5' -60.4 NC_001847.1 + 125466 0.67 0.642273
Target:  5'- cGGGCuUGCCCCGggcGGGCgagGgAUCGggGGg -3'
miRNA:   3'- -CCCG-AUGGGGC---UCCGg--CgUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 79578 0.67 0.642273
Target:  5'- cGGGCUcgcgGCCUCuucGGGCggggGCGCCGggGGc -3'
miRNA:   3'- -CCCGA----UGGGGc--UCCGg---CGUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 121658 0.67 0.642273
Target:  5'- cGGGCUGauggCCGAGGCCaagcccGCgACCGAAa- -3'
miRNA:   3'- -CCCGAUgg--GGCUCCGG------CG-UGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 132711 0.67 0.642273
Target:  5'- cGGCgGCCCUGccGGCCGC-CgCGggGGc -3'
miRNA:   3'- cCCGaUGGGGCu-CCGGCGuG-GCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 105356 0.67 0.642273
Target:  5'- cGGCgcUCCCGccGCCGgGCCGggGc -3'
miRNA:   3'- cCCGauGGGGCucCGGCgUGGCuuCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.