miRNA display CGI


Results 61 - 80 of 356 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 5' -60.4 NC_001847.1 + 77472 0.67 0.676019
Target:  5'- cGGGCgccggGCgCCCGGcccGGcCCGCcggcccgagucggugGCCGggGAg -3'
miRNA:   3'- -CCCGa----UG-GGGCU---CC-GGCG---------------UGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 35629 0.67 0.672063
Target:  5'- cGGCgGCgCUGGGGCCaGCGCUGGAc- -3'
miRNA:   3'- cCCGaUGgGGCUCCGG-CGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 116114 0.67 0.672063
Target:  5'- cGGGcCUGCCggCGGGGUCaCGCgCGAAGAg -3'
miRNA:   3'- -CCC-GAUGGg-GCUCCGGcGUG-GCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 115867 0.67 0.672063
Target:  5'- aGGGa---CCgGAGGUCGCGCCGccGGc -3'
miRNA:   3'- -CCCgaugGGgCUCCGGCGUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 98693 0.67 0.672063
Target:  5'- gGGGCcgAagCCGGGGCCGaaGCCGggGc -3'
miRNA:   3'- -CCCGa-UggGGCUCCGGCg-UGGCuuCu -5'
6493 5' -60.4 NC_001847.1 + 98657 0.67 0.672063
Target:  5'- uGGGCcgAagCCGGGGCCGaaGCCGggGc -3'
miRNA:   3'- -CCCGa-UggGGCUCCGGCg-UGGCuuCu -5'
6493 5' -60.4 NC_001847.1 + 78270 0.67 0.672063
Target:  5'- cGGCgGgCCCGuuGGCCGCGCCcGGGc -3'
miRNA:   3'- cCCGaUgGGGCu-CCGGCGUGGcUUCu -5'
6493 5' -60.4 NC_001847.1 + 64009 0.67 0.672063
Target:  5'- -uGCU-CgCCGGGGUcggcgacguaCGCGCCGAAGAg -3'
miRNA:   3'- ccCGAuGgGGCUCCG----------GCGUGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 91769 0.67 0.672063
Target:  5'- cGGGC-GCUCCGucGGCgGCGCUGGccgcGGAc -3'
miRNA:   3'- -CCCGaUGGGGCu-CCGgCGUGGCU----UCU- -5'
6493 5' -60.4 NC_001847.1 + 34553 0.67 0.672063
Target:  5'- cGGGCUGCUCgGccGCUGCAgCGgcGGc -3'
miRNA:   3'- -CCCGAUGGGgCucCGGCGUgGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 88373 0.67 0.672063
Target:  5'- cGGGCgcggcggaccgGCCCCGcgcggcGGGCgggCGCGCCGucGGg -3'
miRNA:   3'- -CCCGa----------UGGGGC------UCCG---GCGUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 12498 0.67 0.672063
Target:  5'- ----aGCCCgGAGGCCGCAgCCGGc-- -3'
miRNA:   3'- cccgaUGGGgCUCCGGCGU-GGCUucu -5'
6493 5' -60.4 NC_001847.1 + 22284 0.67 0.672063
Target:  5'- aGGCagcGCCgCCGAGGCCGacaCGCUGAuGGg -3'
miRNA:   3'- cCCGa--UGG-GGCUCCGGC---GUGGCUuCU- -5'
6493 5' -60.4 NC_001847.1 + 43532 0.67 0.672063
Target:  5'- cGGGCUuCCUCGcGGCCaacacgGCGCCGcGGu -3'
miRNA:   3'- -CCCGAuGGGGCuCCGG------CGUGGCuUCu -5'
6493 5' -60.4 NC_001847.1 + 82450 0.67 0.672063
Target:  5'- cGGCaACCCCGcgcacGGCCGCgugcggcguGCCGuGGGa -3'
miRNA:   3'- cCCGaUGGGGCu----CCGGCG---------UGGCuUCU- -5'
6493 5' -60.4 NC_001847.1 + 34444 0.67 0.671073
Target:  5'- cGGGCcGCggaCGAGGCCGCgguggccGCCGgcGGc -3'
miRNA:   3'- -CCCGaUGgg-GCUCCGGCG-------UGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 8579 0.67 0.668102
Target:  5'- aGGGCacaggcaaaucagGCCCCGccagGGGCgGCgcucgGCCGggGGc -3'
miRNA:   3'- -CCCGa------------UGGGGC----UCCGgCG-----UGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 111392 0.67 0.668102
Target:  5'- aGGGCacaggcaaaucagGCCCCGccagGGGCgGCgcucgGCCGggGGc -3'
miRNA:   3'- -CCCGa------------UGGGGC----UCCGgCG-----UGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 118298 0.67 0.662153
Target:  5'- -cGCUcGCCUCGAGcGCCGCcCCGAu-- -3'
miRNA:   3'- ccCGA-UGGGGCUC-CGGCGuGGCUucu -5'
6493 5' -60.4 NC_001847.1 + 75475 0.67 0.662153
Target:  5'- cGGCgacaaagagGCCgUCGAGGCgGCGCCGGu-- -3'
miRNA:   3'- cCCGa--------UGG-GGCUCCGgCGUGGCUucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.