miRNA display CGI


Results 41 - 60 of 356 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 5' -60.4 NC_001847.1 + 123304 0.66 0.691781
Target:  5'- aGGGCgGCgCCaGAGGCCuuaCGCCaGAGGGa -3'
miRNA:   3'- -CCCGaUGgGG-CUCCGGc--GUGG-CUUCU- -5'
6493 5' -60.4 NC_001847.1 + 130186 0.66 0.691781
Target:  5'- cGGGC-GCCCgGccugaagagacGGGCgGCGCgGAGGGc -3'
miRNA:   3'- -CCCGaUGGGgC-----------UCCGgCGUGgCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 80684 0.66 0.691781
Target:  5'- cGGCUGCgCgCCGGcGGCgGCugCGGcuGGAa -3'
miRNA:   3'- cCCGAUG-G-GGCU-CCGgCGugGCU--UCU- -5'
6493 5' -60.4 NC_001847.1 + 19918 0.66 0.691781
Target:  5'- aGGGCgucGCCgCCGAccuGCCGCACCu---- -3'
miRNA:   3'- -CCCGa--UGG-GGCUc--CGGCGUGGcuucu -5'
6493 5' -60.4 NC_001847.1 + 130504 0.66 0.691781
Target:  5'- cGGGCUgaggcgcgcgaGCgCCGgcGGGCCGCccgcGCCGAGc- -3'
miRNA:   3'- -CCCGA-----------UGgGGC--UCCGGCG----UGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 75819 0.66 0.691781
Target:  5'- cGGGCUgguacggcGCCgCCGGcGCCGCGCCu---- -3'
miRNA:   3'- -CCCGA--------UGG-GGCUcCGGCGUGGcuucu -5'
6493 5' -60.4 NC_001847.1 + 67306 0.66 0.691781
Target:  5'- cGGCgacgGCCCUuuuuGGGCCGCGCgGAc-- -3'
miRNA:   3'- cCCGa---UGGGGc---UCCGGCGUGgCUucu -5'
6493 5' -60.4 NC_001847.1 + 27691 0.66 0.691781
Target:  5'- cGGGCUgaggcgcgcgaGCgCCGgcGGGCCGCccgcGCCGAGc- -3'
miRNA:   3'- -CCCGA-----------UGgGGC--UCCGGCG----UGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 85069 0.66 0.691781
Target:  5'- uGGCcGCgCCCGGGuCCGCGCCGcgcgcGGAc -3'
miRNA:   3'- cCCGaUG-GGGCUCcGGCGUGGCu----UCU- -5'
6493 5' -60.4 NC_001847.1 + 33786 0.66 0.691781
Target:  5'- aGGGCU-UCgCGGGGCUGCGCgCGGc-- -3'
miRNA:   3'- -CCCGAuGGgGCUCCGGCGUG-GCUucu -5'
6493 5' -60.4 NC_001847.1 + 56875 0.66 0.691781
Target:  5'- cGGGCgcgGCCaCG-GGCC-CGCCGgcGAc -3'
miRNA:   3'- -CCCGa--UGGgGCuCCGGcGUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 119842 0.66 0.681941
Target:  5'- cGGC--CCCCGAcGCCGUGCCGGu-- -3'
miRNA:   3'- cCCGauGGGGCUcCGGCGUGGCUucu -5'
6493 5' -60.4 NC_001847.1 + 31163 0.66 0.681941
Target:  5'- cGGGCgGCgUCGAcGCCGCGCUGGGc- -3'
miRNA:   3'- -CCCGaUGgGGCUcCGGCGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 31738 0.66 0.681941
Target:  5'- cGGaGCgGCCgCGgaGGGCCaggacccgGCGCCGGAGAc -3'
miRNA:   3'- -CC-CGaUGGgGC--UCCGG--------CGUGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 121188 0.66 0.681941
Target:  5'- cGGGCUcGCCaCG-GGCCGCAgCCGcAGc -3'
miRNA:   3'- -CCCGA-UGGgGCuCCGGCGU-GGCuUCu -5'
6493 5' -60.4 NC_001847.1 + 5783 0.66 0.681941
Target:  5'- cGGCgucuaGCCCCG-GGCCcgGCACCGc--- -3'
miRNA:   3'- cCCGa----UGGGGCuCCGG--CGUGGCuucu -5'
6493 5' -60.4 NC_001847.1 + 134551 0.66 0.681941
Target:  5'- cGGaGCgGCCgCGgaGGGCCaggacccgGCGCCGGAGAc -3'
miRNA:   3'- -CC-CGaUGGgGC--UCCGG--------CGUGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 32900 0.66 0.681941
Target:  5'- gGGGCcgGCggggaagCCGGGGCCGCggACgGGAGGa -3'
miRNA:   3'- -CCCGa-UGg------GGCUCCGGCG--UGgCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 50087 0.66 0.681941
Target:  5'- cGGGCgcgGCCaaGGcuGCCGCGCCGGGc- -3'
miRNA:   3'- -CCCGa--UGGggCUc-CGGCGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 36965 0.66 0.681941
Target:  5'- cGGCUGCCuaGAGGacugggCGCGCCGcGGc -3'
miRNA:   3'- cCCGAUGGggCUCCg-----GCGUGGCuUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.