miRNA display CGI


Results 41 - 60 of 356 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 5' -60.4 NC_001847.1 + 112768 0.73 0.314532
Target:  5'- cGGGCgcuucUGCCCCGAGGacuggCGCcCCGAGGc -3'
miRNA:   3'- -CCCG-----AUGGGGCUCCg----GCGuGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 34633 0.73 0.320886
Target:  5'- cGGCgccugcGCgCCGAGGCCgagcggcGCGCCGAGGGg -3'
miRNA:   3'- cCCGa-----UGgGGCUCCGG-------CGUGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 71206 0.73 0.321598
Target:  5'- -uGCUGcCCCCGcGGCCGCGCUGGGuGAu -3'
miRNA:   3'- ccCGAU-GGGGCuCCGGCGUGGCUU-CU- -5'
6493 5' -60.4 NC_001847.1 + 87577 0.73 0.32878
Target:  5'- cGGGCgaggUGCCCgugcucacCGAGGCCGgCGCCGuuGAg -3'
miRNA:   3'- -CCCG----AUGGG--------GCUCCGGC-GUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 132553 0.73 0.32878
Target:  5'- cGGGCUcgcgugcgGCCgCGGcGGCCGCgcaggcgcccgcGCCGAAGAc -3'
miRNA:   3'- -CCCGA--------UGGgGCU-CCGGCG------------UGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 51603 0.73 0.3435
Target:  5'- aGGGCagugcuccACCCCGGGGCgGCGCaCGGAc- -3'
miRNA:   3'- -CCCGa-------UGGGGCUCCGgCGUG-GCUUcu -5'
6493 5' -60.4 NC_001847.1 + 43604 0.73 0.3435
Target:  5'- uGGGCgUGCCCCuugaGGGCuCGaCGCUGGAGAg -3'
miRNA:   3'- -CCCG-AUGGGGc---UCCG-GC-GUGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 16201 0.72 0.351036
Target:  5'- cGGGCUG-CUCGcGGCCGuCugCGAAGGg -3'
miRNA:   3'- -CCCGAUgGGGCuCCGGC-GugGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 128385 0.72 0.358688
Target:  5'- uGGC-GCCUCGcaccGGCCGCACCGcAGAc -3'
miRNA:   3'- cCCGaUGGGGCu---CCGGCGUGGCuUCU- -5'
6493 5' -60.4 NC_001847.1 + 48532 0.72 0.358688
Target:  5'- uGGCccGCCUCGAGGCgCGC-CCGGAGc -3'
miRNA:   3'- cCCGa-UGGGGCUCCG-GCGuGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 82229 0.72 0.358688
Target:  5'- cGGGC-GCCCCGA-GCCGCugcCCGcGGAc -3'
miRNA:   3'- -CCCGaUGGGGCUcCGGCGu--GGCuUCU- -5'
6493 5' -60.4 NC_001847.1 + 116407 0.72 0.358688
Target:  5'- cGGCgcucuggGCCCCG-GGCCGCGCgcuugggcuCGAGGGc -3'
miRNA:   3'- cCCGa------UGGGGCuCCGGCGUG---------GCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 105787 0.72 0.366456
Target:  5'- cGGCagcGCCgCCGGGGCCGCgcGCUGGAGc -3'
miRNA:   3'- cCCGa--UGG-GGCUCCGGCG--UGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 134787 0.72 0.366456
Target:  5'- gGGGCggGCCCCGGGGCgcgaaGC-CCGgGAGGg -3'
miRNA:   3'- -CCCGa-UGGGGCUCCGg----CGuGGC-UUCU- -5'
6493 5' -60.4 NC_001847.1 + 31974 0.72 0.366456
Target:  5'- gGGGCggGCCCCGGGGCgcgaaGC-CCGgGAGGg -3'
miRNA:   3'- -CCCGa-UGGGGCUCCGg----CGuGGC-UUCU- -5'
6493 5' -60.4 NC_001847.1 + 132161 0.72 0.37434
Target:  5'- cGGCUccagcgcgcgGCCCCGGcGGCgcugCGCGCCGAGGc -3'
miRNA:   3'- cCCGA----------UGGGGCU-CCG----GCGUGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 82468 0.72 0.37434
Target:  5'- cGGGCccgGCCCCGgccacgGGGCC--GCCGAAGGc -3'
miRNA:   3'- -CCCGa--UGGGGC------UCCGGcgUGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 29348 0.72 0.37434
Target:  5'- cGGCUccagcgcgcgGCCCCGGcGGCgcugCGCGCCGAGGc -3'
miRNA:   3'- cCCGA----------UGGGGCU-CCG----GCGUGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 134262 0.72 0.37434
Target:  5'- cGGCgGCCCCGgcgcGGGCCGcCGCCGcgcguGGAg -3'
miRNA:   3'- cCCGaUGGGGC----UCCGGC-GUGGCu----UCU- -5'
6493 5' -60.4 NC_001847.1 + 102262 0.72 0.37434
Target:  5'- cGGC--CCCCGAGGCCuCGCCGucGGc -3'
miRNA:   3'- cCCGauGGGGCUCCGGcGUGGCuuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.