miRNA display CGI


Results 61 - 80 of 356 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 5' -60.4 NC_001847.1 + 107723 0.72 0.37434
Target:  5'- cGGGC-ACCCCGGGGCUacaacccuuGgGCCGgcGGg -3'
miRNA:   3'- -CCCGaUGGGGCUCCGG---------CgUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 29348 0.72 0.37434
Target:  5'- cGGCUccagcgcgcgGCCCCGGcGGCgcugCGCGCCGAGGc -3'
miRNA:   3'- cCCGA----------UGGGGCU-CCG----GCGUGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 87665 0.72 0.37434
Target:  5'- uGGGCUGCgCCGcauGGCCcggGCGCUGggGc -3'
miRNA:   3'- -CCCGAUGgGGCu--CCGG---CGUGGCuuCu -5'
6493 5' -60.4 NC_001847.1 + 34084 0.72 0.37434
Target:  5'- cGGCgGCCCCGGGGCCgGCcUCGgcGGg -3'
miRNA:   3'- cCCGaUGGGGCUCCGG-CGuGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 44035 0.72 0.37434
Target:  5'- aGGGCUGCagCGAGGCgCGCGUCGggGc -3'
miRNA:   3'- -CCCGAUGggGCUCCG-GCGUGGCuuCu -5'
6493 5' -60.4 NC_001847.1 + 30434 0.72 0.382338
Target:  5'- cGGGCgcggagGCgCCGGGGCUGCAC-GAGGu -3'
miRNA:   3'- -CCCGa-----UGgGGCUCCGGCGUGgCUUCu -5'
6493 5' -60.4 NC_001847.1 + 131400 0.72 0.389632
Target:  5'- uGGGaCUGCCCCGAgauccgcgaggcGGCCGCgcgcuacgcggcgGCCGcGGGg -3'
miRNA:   3'- -CCC-GAUGGGGCU------------CCGGCG-------------UGGCuUCU- -5'
6493 5' -60.4 NC_001847.1 + 28587 0.72 0.389632
Target:  5'- uGGGaCUGCCCCGAgauccgcgaggcGGCCGCgcgcuacgcggcgGCCGcGGGg -3'
miRNA:   3'- -CCC-GAUGGGGCU------------CCGGCG-------------UGGCuUCU- -5'
6493 5' -60.4 NC_001847.1 + 2971 0.72 0.390448
Target:  5'- cGGCgcgcagcGCCgCCGGGGCCGgCGCUGGAGc -3'
miRNA:   3'- cCCGa------UGG-GGCUCCGGC-GUGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 47799 0.72 0.390448
Target:  5'- cGGCcagGCCCUc-GGCCGaCACCGggGAc -3'
miRNA:   3'- cCCGa--UGGGGcuCCGGC-GUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 123520 0.72 0.393724
Target:  5'- aGGGCUGCCgCgGgcucggcuaaggccaAGGCCGCugCGAacGGGg -3'
miRNA:   3'- -CCCGAUGG-GgC---------------UCCGGCGugGCU--UCU- -5'
6493 5' -60.4 NC_001847.1 + 29781 0.71 0.397843
Target:  5'- aGGGCcGCCCCggcccggcggcggGAGcGCCGCcggguCCGAGGGa -3'
miRNA:   3'- -CCCGaUGGGG-------------CUC-CGGCGu----GGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 132594 0.71 0.397843
Target:  5'- aGGGCcGCCCCggcccggcggcggGAGcGCCGCcggguCCGAGGGa -3'
miRNA:   3'- -CCCGaUGGGG-------------CUC-CGGCGu----GGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 66172 0.71 0.39867
Target:  5'- cGGCcgUGCCCgCGcGGGCCGCGCUGGAc- -3'
miRNA:   3'- cCCG--AUGGG-GC-UCCGGCGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 133651 0.71 0.39867
Target:  5'- cGGCUcuACCCCGAGgcgccGCCGCugCGGc-- -3'
miRNA:   3'- cCCGA--UGGGGCUC-----CGGCGugGCUucu -5'
6493 5' -60.4 NC_001847.1 + 30838 0.71 0.39867
Target:  5'- cGGCUcuACCCCGAGgcgccGCCGCugCGGc-- -3'
miRNA:   3'- cCCGA--UGGGGCUC-----CGGCGugGCUucu -5'
6493 5' -60.4 NC_001847.1 + 83024 0.71 0.40199
Target:  5'- gGGGCgccgccgGCCCgCGgccgcuagugcgcuuGGGCCGCggcgcgGCCGAAGAg -3'
miRNA:   3'- -CCCGa------UGGG-GC---------------UCCGGCG------UGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 117772 0.71 0.40199
Target:  5'- uGGGCgccgacauccacaaaUACCCCugcGGGCUGgACCGAGGGc -3'
miRNA:   3'- -CCCG---------------AUGGGGc--UCCGGCgUGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 11267 0.71 0.407002
Target:  5'- cGGGCcccGCCCCaGGGCCucaGgGCCGggGGu -3'
miRNA:   3'- -CCCGa--UGGGGcUCCGG---CgUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 114080 0.71 0.407002
Target:  5'- cGGGCcccGCCCCaGGGCCucaGgGCCGggGGu -3'
miRNA:   3'- -CCCGa--UGGGGcUCCGG---CgUGGCuuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.