miRNA display CGI


Results 41 - 60 of 356 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 5' -60.4 NC_001847.1 + 16246 0.68 0.563016
Target:  5'- cGGCcccgGCCCCGGccccGGCCccguGCACCGAGc- -3'
miRNA:   3'- cCCGa---UGGGGCU----CCGG----CGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 18078 1.1 0.00098
Target:  5'- gGGGCUACCCCGAGGCCGCACCGAAGAc -3'
miRNA:   3'- -CCCGAUGGGGCUCCGGCGUGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 18510 0.67 0.642273
Target:  5'- cGGCUGCC--GAGGCCaGCGCUGcGGGc -3'
miRNA:   3'- cCCGAUGGggCUCCGG-CGUGGCuUCU- -5'
6493 5' -60.4 NC_001847.1 + 18561 0.66 0.730587
Target:  5'- gGGGCUcggugaccGgCCCGuGuGCCGCGCCaAAGu -3'
miRNA:   3'- -CCCGA--------UgGGGCuC-CGGCGUGGcUUCu -5'
6493 5' -60.4 NC_001847.1 + 19918 0.66 0.691781
Target:  5'- aGGGCgucGCCgCCGAccuGCCGCACCu---- -3'
miRNA:   3'- -CCCGa--UGG-GGCUc--CGGCGUGGcuucu -5'
6493 5' -60.4 NC_001847.1 + 20028 0.7 0.450248
Target:  5'- aGGGCgGCCCUGcGGCCGcCGCCcuGGGc -3'
miRNA:   3'- -CCCGaUGGGGCuCCGGC-GUGGcuUCU- -5'
6493 5' -60.4 NC_001847.1 + 21508 0.69 0.543533
Target:  5'- cGGGCgcGCCUCGgcggGGGCCGCGCgGGc-- -3'
miRNA:   3'- -CCCGa-UGGGGC----UCCGGCGUGgCUucu -5'
6493 5' -60.4 NC_001847.1 + 21640 0.69 0.524276
Target:  5'- cGGGCcGCgCCCG-GGCgCG-ACCGGAGGg -3'
miRNA:   3'- -CCCGaUG-GGGCuCCG-GCgUGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 21874 0.69 0.543533
Target:  5'- gGGGCUGCggcgcgcugCCGAGGCCGagcccgcgacUACCGAgacGGAg -3'
miRNA:   3'- -CCCGAUGg--------GGCUCCGGC----------GUGGCU---UCU- -5'
6493 5' -60.4 NC_001847.1 + 21925 0.68 0.603473
Target:  5'- cGGGCgaggcggaggagaggACCgCGGcucgcGGCgGCACCGggGGg -3'
miRNA:   3'- -CCCGa--------------UGGgGCU-----CCGgCGUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 22080 0.68 0.602481
Target:  5'- cGGCUccgaaaagcggGCCCgGcAGG-CGCGCCGggGGc -3'
miRNA:   3'- cCCGA-----------UGGGgC-UCCgGCGUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 22284 0.67 0.672063
Target:  5'- aGGCagcGCCgCCGAGGCCGacaCGCUGAuGGg -3'
miRNA:   3'- cCCGa--UGG-GGCUCCGGC---GUGGCUuCU- -5'
6493 5' -60.4 NC_001847.1 + 22384 0.69 0.533874
Target:  5'- gGGGCagaagGCgCCCG-GGCCGCGgCGAGc- -3'
miRNA:   3'- -CCCGa----UG-GGGCuCCGGCGUgGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 22581 0.69 0.533874
Target:  5'- cGGGC-GCCCCGGGGCagggccCGC-CCGGu-- -3'
miRNA:   3'- -CCCGaUGGGGCUCCG------GCGuGGCUucu -5'
6493 5' -60.4 NC_001847.1 + 22653 0.67 0.642273
Target:  5'- cGGGCuUGCCCCGggcGGGCgagGgAUCGggGGg -3'
miRNA:   3'- -CCCG-AUGGGGC---UCCGg--CgUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 23568 0.7 0.449358
Target:  5'- aGGGCcccgGCCCCGGGGCggaugCGCuuaccuugccuuuGCCGggGc -3'
miRNA:   3'- -CCCGa---UGGGGCUCCG-----GCG-------------UGGCuuCu -5'
6493 5' -60.4 NC_001847.1 + 26653 0.67 0.622363
Target:  5'- uGGGCgGCCCCGGccGGCC-CACCu---- -3'
miRNA:   3'- -CCCGaUGGGGCU--CCGGcGUGGcuucu -5'
6493 5' -60.4 NC_001847.1 + 27436 0.69 0.553249
Target:  5'- gGGGUgcccGCCCgCGAGcGCCGCcaACCGcAGGc -3'
miRNA:   3'- -CCCGa---UGGG-GCUC-CGGCG--UGGCuUCU- -5'
6493 5' -60.4 NC_001847.1 + 27511 0.68 0.592567
Target:  5'- cGGCcGCCgCCGcGGCgGCGgCGggGAc -3'
miRNA:   3'- cCCGaUGG-GGCuCCGgCGUgGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 27691 0.66 0.691781
Target:  5'- cGGGCUgaggcgcgcgaGCgCCGgcGGGCCGCccgcGCCGAGc- -3'
miRNA:   3'- -CCCGA-----------UGgGGC--UCCGGCG----UGGCUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.