miRNA display CGI


Results 21 - 40 of 356 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 5' -60.4 NC_001847.1 + 8579 0.67 0.668102
Target:  5'- aGGGCacaggcaaaucagGCCCCGccagGGGCgGCgcucgGCCGggGGc -3'
miRNA:   3'- -CCCGa------------UGGGGC----UCCGgCG-----UGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 9623 0.7 0.450248
Target:  5'- -aGCUGCgCCCGccGCCGCGCCGGc-- -3'
miRNA:   3'- ccCGAUG-GGGCucCGGCGUGGCUucu -5'
6493 5' -60.4 NC_001847.1 + 9752 0.69 0.543533
Target:  5'- cGGGCccUGCCCCGGGGCgccCGCuuACCGc--- -3'
miRNA:   3'- -CCCG--AUGGGGCUCCG---GCG--UGGCuucu -5'
6493 5' -60.4 NC_001847.1 + 9955 0.7 0.459197
Target:  5'- cGGGCgccuucUGCCCCGAGGaCUggGCcCCGAGGc -3'
miRNA:   3'- -CCCG------AUGGGGCUCC-GG--CGuGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 10452 0.67 0.632318
Target:  5'- cGGCU-CCCCu-GGCCGCguuGCUGGAGc -3'
miRNA:   3'- cCCGAuGGGGcuCCGGCG---UGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 10494 0.7 0.459197
Target:  5'- uGGGCUuCCCCGAcGGCCccGCGCUGcugcGGGc -3'
miRNA:   3'- -CCCGAuGGGGCU-CCGG--CGUGGCu---UCU- -5'
6493 5' -60.4 NC_001847.1 + 10680 0.68 0.602481
Target:  5'- gGGGCUcGCCCUccGGUCGCGCCcGGGc -3'
miRNA:   3'- -CCCGA-UGGGGcuCCGGCGUGGcUUCu -5'
6493 5' -60.4 NC_001847.1 + 11267 0.71 0.407002
Target:  5'- cGGGCcccGCCCCaGGGCCucaGgGCCGggGGu -3'
miRNA:   3'- -CCCGa--UGGGGcUCCGG---CgUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 11309 0.74 0.294044
Target:  5'- uGGGCgcgcCCgCCGAGGCCggcgggcggcugGCGCCGGAGc -3'
miRNA:   3'- -CCCGau--GG-GGCUCCGG------------CGUGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 12062 0.66 0.701574
Target:  5'- -cGCUGCggacgCCGAGGCCGCggagcGCCGcGGGu -3'
miRNA:   3'- ccCGAUGg----GGCUCCGGCG-----UGGCuUCU- -5'
6493 5' -60.4 NC_001847.1 + 12498 0.67 0.672063
Target:  5'- ----aGCCCgGAGGCCGCAgCCGGc-- -3'
miRNA:   3'- cccgaUGGGgCUCCGGCGU-GGCUucu -5'
6493 5' -60.4 NC_001847.1 + 12936 0.68 0.591577
Target:  5'- aGGGCacccgGCCCCGGcuaguguGGCgGCGCgCGAuGAg -3'
miRNA:   3'- -CCCGa----UGGGGCU-------CCGgCGUG-GCUuCU- -5'
6493 5' -60.4 NC_001847.1 + 13460 0.66 0.711312
Target:  5'- cGGGCgcGCaCCUGcucGGGCCGCACCc---- -3'
miRNA:   3'- -CCCGa-UG-GGGC---UCCGGCGUGGcuucu -5'
6493 5' -60.4 NC_001847.1 + 13949 0.66 0.720985
Target:  5'- gGGGCcGCCCCGcgcaAGuGCCGCcCCGc--- -3'
miRNA:   3'- -CCCGaUGGGGC----UC-CGGCGuGGCuucu -5'
6493 5' -60.4 NC_001847.1 + 14997 0.66 0.701574
Target:  5'- uGGCaagcGCCCCucGGCCGCGgUGggGc -3'
miRNA:   3'- cCCGa---UGGGGcuCCGGCGUgGCuuCu -5'
6493 5' -60.4 NC_001847.1 + 15764 0.69 0.514745
Target:  5'- aGGUgUACCCgCGA-GCCGCGCCGAGu- -3'
miRNA:   3'- cCCG-AUGGG-GCUcCGGCGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 15929 0.68 0.572829
Target:  5'- -cGCcGCCCCGcgguGGCCGCggcGCCGAcGAg -3'
miRNA:   3'- ccCGaUGGGGCu---CCGGCG---UGGCUuCU- -5'
6493 5' -60.4 NC_001847.1 + 15988 0.67 0.642273
Target:  5'- -cGCcGCCCCGcggcGGCCGCggcGCCGAcGAg -3'
miRNA:   3'- ccCGaUGGGGCu---CCGGCG---UGGCUuCU- -5'
6493 5' -60.4 NC_001847.1 + 16164 0.74 0.274612
Target:  5'- gGGGCgaccGCCCCGuuGGCCGCGgaccCCGAaucGGAa -3'
miRNA:   3'- -CCCGa---UGGGGCu-CCGGCGU----GGCU---UCU- -5'
6493 5' -60.4 NC_001847.1 + 16201 0.72 0.351036
Target:  5'- cGGGCUG-CUCGcGGCCGuCugCGAAGGg -3'
miRNA:   3'- -CCCGAUgGGGCuCCGGC-GugGCUUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.