miRNA display CGI


Results 21 - 40 of 356 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 5' -60.4 NC_001847.1 + 16164 0.74 0.274612
Target:  5'- gGGGCgaccGCCCCGuuGGCCGCGgaccCCGAaucGGAa -3'
miRNA:   3'- -CCCGa---UGGGGCu-CCGGCGU----GGCU---UCU- -5'
6493 5' -60.4 NC_001847.1 + 117687 0.74 0.274612
Target:  5'- -cGCU-CCCUGAcGGCCGcCACCGAGGGc -3'
miRNA:   3'- ccCGAuGGGGCU-CCGGC-GUGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 41619 0.74 0.280973
Target:  5'- cGGGC-GCUCCGGGGCCGC-CgGgcGAg -3'
miRNA:   3'- -CCCGaUGGGGCUCCGGCGuGgCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 76397 0.74 0.28745
Target:  5'- gGGGggGCgCCgGGGGCCGCGgCGggGGc -3'
miRNA:   3'- -CCCgaUG-GGgCUCCGGCGUgGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 7760 0.74 0.28745
Target:  5'- aGGGCaAgCCCGAcGGCCGUugguGCCGAGGc -3'
miRNA:   3'- -CCCGaUgGGGCU-CCGGCG----UGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 83571 0.74 0.28745
Target:  5'- cGGCUGCCCCGGcGCCGCggaagcGCUGgcGAg -3'
miRNA:   3'- cCCGAUGGGGCUcCGGCG------UGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 101386 0.74 0.28745
Target:  5'- gGGGCUGCCCgCGGcGCCGCcggcaAUCGggGGu -3'
miRNA:   3'- -CCCGAUGGG-GCUcCGGCG-----UGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 72645 0.74 0.294044
Target:  5'- cGGCUguggccgccACCCCGcGGCCGCccGCCGgcGAc -3'
miRNA:   3'- cCCGA---------UGGGGCuCCGGCG--UGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 11309 0.74 0.294044
Target:  5'- uGGGCgcgcCCgCCGAGGCCggcgggcggcugGCGCCGGAGc -3'
miRNA:   3'- -CCCGau--GG-GGCUCCGG------------CGUGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 33926 0.74 0.294044
Target:  5'- aGGCUGgccuCCCCGugugcAGGCC-CGCCGGAGAa -3'
miRNA:   3'- cCCGAU----GGGGC-----UCCGGcGUGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 115051 0.74 0.294044
Target:  5'- cGGGCUAgCgauggCCG-GGCCGCGCCGcGGGAg -3'
miRNA:   3'- -CCCGAUgG-----GGCuCCGGCGUGGC-UUCU- -5'
6493 5' -60.4 NC_001847.1 + 28096 0.74 0.300756
Target:  5'- gGGGCggcggUGCCCuCGGGGCCaGgACCGAGGc -3'
miRNA:   3'- -CCCG-----AUGGG-GCUCCGG-CgUGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 130909 0.74 0.300756
Target:  5'- gGGGCggcggUGCCCuCGGGGCCaGgACCGAGGc -3'
miRNA:   3'- -CCCG-----AUGGG-GCUCCGG-CgUGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 103118 0.74 0.300756
Target:  5'- gGGGCUuCCCCGcgcgagcgcGGGCCGCcggcGCgCGAAGGu -3'
miRNA:   3'- -CCCGAuGGGGC---------UCCGGCG----UG-GCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 46333 0.73 0.307585
Target:  5'- cGGCcGCCCgCGGGGCCGCGUCGgcGGc -3'
miRNA:   3'- cCCGaUGGG-GCUCCGGCGUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 64116 0.73 0.307585
Target:  5'- cGGGUgacagagcgUGCCCau-GGCCGCGCCGAAcGAa -3'
miRNA:   3'- -CCCG---------AUGGGgcuCCGGCGUGGCUU-CU- -5'
6493 5' -60.4 NC_001847.1 + 96437 0.73 0.307585
Target:  5'- aGGCgcgGCCCCgGAGGCacuggaggCGCugCGGAGAc -3'
miRNA:   3'- cCCGa--UGGGG-CUCCG--------GCGugGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 112768 0.73 0.314532
Target:  5'- cGGGCgcuucUGCCCCGAGGacuggCGCcCCGAGGc -3'
miRNA:   3'- -CCCG-----AUGGGGCUCCg----GCGuGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 27803 0.73 0.314532
Target:  5'- cGGGg-GCCaCCGAGGgCGCcgagGCCGAAGAc -3'
miRNA:   3'- -CCCgaUGG-GGCUCCgGCG----UGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 122020 0.73 0.314532
Target:  5'- cGGGgUGCUgaUCGcGGCCGCAgCCGAGGAg -3'
miRNA:   3'- -CCCgAUGG--GGCuCCGGCGU-GGCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.