miRNA display CGI


Results 21 - 40 of 356 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 5' -60.4 NC_001847.1 + 56875 0.66 0.691781
Target:  5'- cGGGCgcgGCCaCG-GGCC-CGCCGgcGAc -3'
miRNA:   3'- -CCCGa--UGGgGCuCCGGcGUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 134551 0.66 0.681941
Target:  5'- cGGaGCgGCCgCGgaGGGCCaggacccgGCGCCGGAGAc -3'
miRNA:   3'- -CC-CGaUGGgGC--UCCGG--------CGUGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 77637 0.66 0.701574
Target:  5'- cGGCgcgccGCCCgugGAGGCCuucgacgcggGCGCCGAGGu -3'
miRNA:   3'- cCCGa----UGGGg--CUCCGG----------CGUGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 131032 0.66 0.720985
Target:  5'- gGGGCgagGCCCgGgaGGGgaGCACCGAc-- -3'
miRNA:   3'- -CCCGa--UGGGgC--UCCggCGUGGCUucu -5'
6493 5' -60.4 NC_001847.1 + 90550 0.66 0.720985
Target:  5'- uGGCgGCCCUc--GCCGCGCgCGAGGGc -3'
miRNA:   3'- cCCGaUGGGGcucCGGCGUG-GCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 80684 0.66 0.691781
Target:  5'- cGGCUGCgCgCCGGcGGCgGCugCGGcuGGAa -3'
miRNA:   3'- cCCGAUG-G-GGCU-CCGgCGugGCU--UCU- -5'
6493 5' -60.4 NC_001847.1 + 84222 0.66 0.720985
Target:  5'- aGGCccugACggCCGGGGCCGCcGCgGggGAg -3'
miRNA:   3'- cCCGa---UGg-GGCUCCGGCG-UGgCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 80400 0.66 0.711312
Target:  5'- uGGC-GCUUgGGGGCCGCAacggcaaagUCGAGGAa -3'
miRNA:   3'- cCCGaUGGGgCUCCGGCGU---------GGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 30400 0.66 0.730587
Target:  5'- cGGCgg-CCCGAGuggccGCCGCGCCGcGGc -3'
miRNA:   3'- cCCGaugGGGCUC-----CGGCGUGGCuUCu -5'
6493 5' -60.4 NC_001847.1 + 108542 0.66 0.730587
Target:  5'- aGGGCUuaccuGCCCgCGGGGCgGUucGCCGccAAGc -3'
miRNA:   3'- -CCCGA-----UGGG-GCUCCGgCG--UGGC--UUCu -5'
6493 5' -60.4 NC_001847.1 + 96091 0.66 0.730587
Target:  5'- uGGCggaGCCggagUCGGGGCCGgaGCCGGAGu -3'
miRNA:   3'- cCCGa--UGG----GGCUCCGGCg-UGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 64031 0.66 0.701574
Target:  5'- cGGGCUugCCCGcGGUUcacgccuggGCGCUGGAc- -3'
miRNA:   3'- -CCCGAugGGGCuCCGG---------CGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 31163 0.66 0.681941
Target:  5'- cGGGCgGCgUCGAcGCCGCGCUGGGc- -3'
miRNA:   3'- -CCCGaUGgGGCUcCGGCGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 36015 0.66 0.720985
Target:  5'- cGGGCgugGUgCUGGGGCUGCGCgCGGAcGAg -3'
miRNA:   3'- -CCCGa--UGgGGCUCCGGCGUG-GCUU-CU- -5'
6493 5' -60.4 NC_001847.1 + 130504 0.66 0.691781
Target:  5'- cGGGCUgaggcgcgcgaGCgCCGgcGGGCCGCccgcGCCGAGc- -3'
miRNA:   3'- -CCCGA-----------UGgGGC--UCCGGCG----UGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 79239 0.66 0.730587
Target:  5'- cGGGCgcgcuCCCCGA-GCUGCuaGCCGgcGu -3'
miRNA:   3'- -CCCGau---GGGGCUcCGGCG--UGGCuuCu -5'
6493 5' -60.4 NC_001847.1 + 13460 0.66 0.711312
Target:  5'- cGGGCgcGCaCCUGcucGGGCCGCACCc---- -3'
miRNA:   3'- -CCCGa-UG-GGGC---UCCGGCGUGGcuucu -5'
6493 5' -60.4 NC_001847.1 + 50087 0.66 0.681941
Target:  5'- cGGGCgcgGCCaaGGcuGCCGCGCCGGGc- -3'
miRNA:   3'- -CCCGa--UGGggCUc-CGGCGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 5783 0.66 0.681941
Target:  5'- cGGCgucuaGCCCCG-GGCCcgGCACCGc--- -3'
miRNA:   3'- cCCGa----UGGGGCuCCGG--CGUGGCuucu -5'
6493 5' -60.4 NC_001847.1 + 60864 0.66 0.711312
Target:  5'- aGGGCguccaGCgCgGGgcGGCCGCGCCcggGAAGAg -3'
miRNA:   3'- -CCCGa----UGgGgCU--CCGGCGUGG---CUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.