miRNA display CGI


Results 21 - 40 of 356 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 5' -60.4 NC_001847.1 + 131400 0.72 0.389632
Target:  5'- uGGGaCUGCCCCGAgauccgcgaggcGGCCGCgcgcuacgcggcgGCCGcGGGg -3'
miRNA:   3'- -CCC-GAUGGGGCU------------CCGGCG-------------UGGCuUCU- -5'
6493 5' -60.4 NC_001847.1 + 131255 0.7 0.483821
Target:  5'- uGGCUACgCCGcggcgccgcgcgacGGGCCGCcgccGCUGGAGGg -3'
miRNA:   3'- cCCGAUGgGGC--------------UCCGGCG----UGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 131144 0.7 0.450248
Target:  5'- cGGGCccggcGCCCCGcgGGGCCGCGcgcCCGGGc- -3'
miRNA:   3'- -CCCGa----UGGGGC--UCCGGCGU---GGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 131032 0.66 0.720985
Target:  5'- gGGGCgagGCCCgGgaGGGgaGCACCGAc-- -3'
miRNA:   3'- -CCCGa--UGGGgC--UCCggCGUGGCUucu -5'
6493 5' -60.4 NC_001847.1 + 130943 0.66 0.701574
Target:  5'- cGGCgacguugGgCCCGAGGaCUGCAgcgacgccggguCCGAGGAc -3'
miRNA:   3'- cCCGa------UgGGGCUCC-GGCGU------------GGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 130909 0.74 0.300756
Target:  5'- gGGGCggcggUGCCCuCGGGGCCaGgACCGAGGc -3'
miRNA:   3'- -CCCG-----AUGGG-GCUCCGG-CgUGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 130869 0.69 0.553249
Target:  5'- gGGGCggcGCCCCucaAGGCCGaAgCGggGAc -3'
miRNA:   3'- -CCCGa--UGGGGc--UCCGGCgUgGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 130867 0.68 0.572829
Target:  5'- cGGCgcgcGCCUCGuGGCCGCcaaaGCCGAc-- -3'
miRNA:   3'- cCCGa---UGGGGCuCCGGCG----UGGCUucu -5'
6493 5' -60.4 NC_001847.1 + 130795 0.66 0.720021
Target:  5'- aGGCgGCCgCGGccggggcggaggcGGCCGCgGCCGAAGc -3'
miRNA:   3'- cCCGaUGGgGCU-------------CCGGCG-UGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 130616 0.73 0.314532
Target:  5'- cGGGg-GCCaCCGAGGgCGCcgagGCCGAAGAc -3'
miRNA:   3'- -CCCgaUGG-GGCUCCgGCG----UGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 130504 0.66 0.691781
Target:  5'- cGGGCUgaggcgcgcgaGCgCCGgcGGGCCGCccgcGCCGAGc- -3'
miRNA:   3'- -CCCGA-----------UGgGGC--UCCGGCG----UGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 130186 0.66 0.691781
Target:  5'- cGGGC-GCCCgGccugaagagacGGGCgGCGCgGAGGGc -3'
miRNA:   3'- -CCCGaUGGGgC-----------UCCGgCGUGgCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 129466 0.67 0.622363
Target:  5'- uGGGCgGCCCCGGccGGCC-CACCu---- -3'
miRNA:   3'- -CCCGaUGGGGCU--CCGGcGUGGcuucu -5'
6493 5' -60.4 NC_001847.1 + 128818 0.68 0.592567
Target:  5'- gGGGC-ACCCgCGuacguGGCCGCGCgcauCGAGGc -3'
miRNA:   3'- -CCCGaUGGG-GCu----CCGGCGUG----GCUUCu -5'
6493 5' -60.4 NC_001847.1 + 128385 0.72 0.358688
Target:  5'- uGGC-GCCUCGcaccGGCCGCACCGcAGAc -3'
miRNA:   3'- cCCGaUGGGGCu---CCGGCGUGGCuUCU- -5'
6493 5' -60.4 NC_001847.1 + 127397 0.69 0.553249
Target:  5'- cGGGCUugCCCu-GGCCGcCGCCu---- -3'
miRNA:   3'- -CCCGAugGGGcuCCGGC-GUGGcuucu -5'
6493 5' -60.4 NC_001847.1 + 126381 0.7 0.449358
Target:  5'- aGGGCcccgGCCCCGGGGCggaugCGCuuaccuugccuuuGCCGggGc -3'
miRNA:   3'- -CCCGa---UGGGGCUCCG-----GCG-------------UGGCuuCu -5'
6493 5' -60.4 NC_001847.1 + 125466 0.67 0.642273
Target:  5'- cGGGCuUGCCCCGggcGGGCgagGgAUCGggGGg -3'
miRNA:   3'- -CCCG-AUGGGGC---UCCGg--CgUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 125412 0.7 0.459197
Target:  5'- cGGcGaCUGCCCCGGcGCCGC-CgGAGGAc -3'
miRNA:   3'- -CC-C-GAUGGGGCUcCGGCGuGgCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 125394 0.69 0.533874
Target:  5'- cGGGC-GCCCCGGGGCagggccCGC-CCGGu-- -3'
miRNA:   3'- -CCCGaUGGGGCUCCG------GCGuGGCUucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.