miRNA display CGI


Results 1 - 20 of 356 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 5' -60.4 NC_001847.1 + 135060 0.7 0.48567
Target:  5'- gGGGCggaGCCCaGAGcgggcccgggcccGCCGCGCCGAAa- -3'
miRNA:   3'- -CCCGa--UGGGgCUC-------------CGGCGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 135007 0.67 0.621368
Target:  5'- cGGCcggGgCCCGAGGcCCGCgggcgggGCCGggGc -3'
miRNA:   3'- cCCGa--UgGGGCUCC-GGCG-------UGGCuuCu -5'
6493 5' -60.4 NC_001847.1 + 134916 0.71 0.42399
Target:  5'- gGGGCgcgagGCCCgGgcucGGGCCcccggGCGCCGggGGc -3'
miRNA:   3'- -CCCGa----UGGGgC----UCCGG-----CGUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 134871 0.68 0.602481
Target:  5'- cGGGCUcggcgGCCCCcGGGCUcgggccccuggGCGCCGGGc- -3'
miRNA:   3'- -CCCGA-----UGGGGcUCCGG-----------CGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 134787 0.72 0.366456
Target:  5'- gGGGCggGCCCCGGGGCgcgaaGC-CCGgGAGGg -3'
miRNA:   3'- -CCCGa-UGGGGCUCCGg----CGuGGC-UUCU- -5'
6493 5' -60.4 NC_001847.1 + 134551 0.66 0.681941
Target:  5'- cGGaGCgGCCgCGgaGGGCCaggacccgGCGCCGGAGAc -3'
miRNA:   3'- -CC-CGaUGGgGC--UCCGG--------CGUGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 134262 0.72 0.37434
Target:  5'- cGGCgGCCCCGgcgcGGGCCGcCGCCGcgcguGGAg -3'
miRNA:   3'- cCCGaUGGGGC----UCCGGC-GUGGCu----UCU- -5'
6493 5' -60.4 NC_001847.1 + 133651 0.71 0.39867
Target:  5'- cGGCUcuACCCCGAGgcgccGCCGCugCGGc-- -3'
miRNA:   3'- cCCGA--UGGGGCUC-----CGGCGugGCUucu -5'
6493 5' -60.4 NC_001847.1 + 133213 0.66 0.730587
Target:  5'- cGGCgg-CCCGAGuggccGCCGCGCCGcGGc -3'
miRNA:   3'- cCCGaugGGGCUC-----CGGCGUGGCuUCu -5'
6493 5' -60.4 NC_001847.1 + 133190 0.69 0.543533
Target:  5'- cGGGCUGCCCUcgcugGAGGagcuCUGCGCCGc--- -3'
miRNA:   3'- -CCCGAUGGGG-----CUCC----GGCGUGGCuucu -5'
6493 5' -60.4 NC_001847.1 + 133010 0.67 0.632318
Target:  5'- cGGcGCUcgccuucgACCCCGAGGC-GCugGCCGAGa- -3'
miRNA:   3'- -CC-CGA--------UGGGGCUCCGgCG--UGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 132932 0.69 0.52141
Target:  5'- cGGcGCUggcggccuacugccGCCCCGAGGUCGCGgCGcGGc -3'
miRNA:   3'- -CC-CGA--------------UGGGGCUCCGGCGUgGCuUCu -5'
6493 5' -60.4 NC_001847.1 + 132879 0.68 0.572829
Target:  5'- cGGCUuCCgCCGcGuGCCGC-CCGggGAc -3'
miRNA:   3'- cCCGAuGG-GGCuC-CGGCGuGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 132711 0.67 0.642273
Target:  5'- cGGCgGCCCUGccGGCCGC-CgCGggGGc -3'
miRNA:   3'- cCCGaUGGGGCu-CCGGCGuG-GCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 132594 0.71 0.397843
Target:  5'- aGGGCcGCCCCggcccggcggcggGAGcGCCGCcggguCCGAGGGa -3'
miRNA:   3'- -CCCGaUGGGG-------------CUC-CGGCGu----GGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 132553 0.73 0.32878
Target:  5'- cGGGCUcgcgugcgGCCgCGGcGGCCGCgcaggcgcccgcGCCGAAGAc -3'
miRNA:   3'- -CCCGA--------UGGgGCU-CCGGCG------------UGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 132464 0.7 0.486596
Target:  5'- cGGGCggACCCgGAGGaCgGguCCGAGGc -3'
miRNA:   3'- -CCCGa-UGGGgCUCC-GgCguGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 132384 0.68 0.592567
Target:  5'- gGGGCgccgGCgCCGGcgccGCCGCGCCGGgccGGGg -3'
miRNA:   3'- -CCCGa---UGgGGCUc---CGGCGUGGCU---UCU- -5'
6493 5' -60.4 NC_001847.1 + 132161 0.72 0.37434
Target:  5'- cGGCUccagcgcgcgGCCCCGGcGGCgcugCGCGCCGAGGc -3'
miRNA:   3'- cCCGA----------UGGGGCU-CCG----GCGUGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 131808 0.78 0.166283
Target:  5'- uGGcCUACCCgGAGGCCGgCGCCGgcGGc -3'
miRNA:   3'- cCC-GAUGGGgCUCCGGC-GUGGCuuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.