miRNA display CGI


Results 41 - 60 of 600 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 3' -56.5 NC_001847.1 + 87055 0.66 0.877259
Target:  5'- uCUGCuGCaGCUUccgcgcgGCGUgcGCCCC-CGCCu -3'
miRNA:   3'- -GACGcCG-CGAA-------UGCAa-CGGGGuGUGG- -5'
6494 3' -56.5 NC_001847.1 + 11771 0.66 0.877259
Target:  5'- gUGUGaGCGCUccauuuaUAUGcaGCCCUACACg -3'
miRNA:   3'- gACGC-CGCGA-------AUGCaaCGGGGUGUGg -5'
6494 3' -56.5 NC_001847.1 + 28874 0.66 0.870699
Target:  5'- -gGCGGCGCUgggGCGagUUGCagagCACGCg -3'
miRNA:   3'- gaCGCCGCGAa--UGC--AACGgg--GUGUGg -5'
6494 3' -56.5 NC_001847.1 + 51549 0.66 0.870699
Target:  5'- gCUGCGcGCGCgcGCGUgcucggGCUCgCggGCGCCu -3'
miRNA:   3'- -GACGC-CGCGaaUGCAa-----CGGG-G--UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 20819 0.66 0.870699
Target:  5'- -gGCGGCGCUUuCGcucGCCUCuuACGCg -3'
miRNA:   3'- gaCGCCGCGAAuGCaa-CGGGG--UGUGg -5'
6494 3' -56.5 NC_001847.1 + 104100 0.66 0.870699
Target:  5'- -gGCGGCGCggugGCug-GCCgCCuCGCCc -3'
miRNA:   3'- gaCGCCGCGaa--UGcaaCGG-GGuGUGG- -5'
6494 3' -56.5 NC_001847.1 + 23082 0.66 0.870699
Target:  5'- -cGCcgagGGCGCccucUACGUaGCCCgcgCGCGCCa -3'
miRNA:   3'- gaCG----CCGCGa---AUGCAaCGGG---GUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 43317 0.66 0.870699
Target:  5'- -aGCGcGCGCUgcCGUgcUGCCaucgCCGCGCg -3'
miRNA:   3'- gaCGC-CGCGAauGCA--ACGG----GGUGUGg -5'
6494 3' -56.5 NC_001847.1 + 60697 0.66 0.870699
Target:  5'- aCUGCaGCGCcacgGCGUcgugcGCCgCCACgACCu -3'
miRNA:   3'- -GACGcCGCGaa--UGCAa----CGG-GGUG-UGG- -5'
6494 3' -56.5 NC_001847.1 + 21974 0.66 0.870699
Target:  5'- -cGCGGCGCcg--GUUGCCgCC-CGCg -3'
miRNA:   3'- gaCGCCGCGaaugCAACGG-GGuGUGg -5'
6494 3' -56.5 NC_001847.1 + 115043 0.66 0.870699
Target:  5'- -gGCGGCcacggGCUaGCGaugGCCgggCCGCGCCg -3'
miRNA:   3'- gaCGCCG-----CGAaUGCaa-CGG---GGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 80343 0.66 0.870699
Target:  5'- -aGCGGCGCcagcucgcagUACccgUGCagcgugCCCACGCCu -3'
miRNA:   3'- gaCGCCGCGa---------AUGca-ACG------GGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 131432 0.66 0.870699
Target:  5'- -gGcCGGCGCgcGCGaUUGCCgCGCcuACCu -3'
miRNA:   3'- gaC-GCCGCGaaUGC-AACGGgGUG--UGG- -5'
6494 3' -56.5 NC_001847.1 + 11815 0.66 0.870699
Target:  5'- -cGUGGCGUUUGCGagGCCUCccucuggcguaAgGCCu -3'
miRNA:   3'- gaCGCCGCGAAUGCaaCGGGG-----------UgUGG- -5'
6494 3' -56.5 NC_001847.1 + 129965 0.66 0.870699
Target:  5'- -cGCGGCGCU---GUU-CCCCGaaauCGCCg -3'
miRNA:   3'- gaCGCCGCGAaugCAAcGGGGU----GUGG- -5'
6494 3' -56.5 NC_001847.1 + 126044 0.66 0.870699
Target:  5'- cCUGCGGUgGCUccgagaGCGgcaCCCCGCGCg -3'
miRNA:   3'- -GACGCCG-CGAa-----UGCaacGGGGUGUGg -5'
6494 3' -56.5 NC_001847.1 + 1287 0.66 0.870699
Target:  5'- -gGCGGCGCggugGCug-GCCgCCuCGCCc -3'
miRNA:   3'- gaCGCCGCGaa--UGcaaCGG-GGuGUGG- -5'
6494 3' -56.5 NC_001847.1 + 93106 0.66 0.870699
Target:  5'- -aGCGGgGCggGCuauaaagGCgCCGCGCCg -3'
miRNA:   3'- gaCGCCgCGaaUGcaa----CGgGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 99690 0.66 0.870699
Target:  5'- uUGCGGCGCgcgGCGcggGCCgCCguaaagucaGCGCg -3'
miRNA:   3'- gACGCCGCGaa-UGCaa-CGG-GG---------UGUGg -5'
6494 3' -56.5 NC_001847.1 + 68066 0.66 0.870699
Target:  5'- -cGCGGCGCgccugcgGCGggGCga-ACGCCg -3'
miRNA:   3'- gaCGCCGCGaa-----UGCaaCGgggUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.