miRNA display CGI


Results 21 - 40 of 600 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 3' -56.5 NC_001847.1 + 133178 0.66 0.880826
Target:  5'- cCUGCgcgGGCGCggGC--UGCCCUcgcuggaggagcucuGCGCCg -3'
miRNA:   3'- -GACG---CCGCGaaUGcaACGGGG---------------UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 60821 0.66 0.880826
Target:  5'- cCUGCGGCaGCggcacCGUcaugggaaacagcaGCUCCGCGCCc -3'
miRNA:   3'- -GACGCCG-CGaau--GCAa-------------CGGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 50362 0.66 0.878692
Target:  5'- -gGCGGCGCggccgacgcuaaggACGgcGCCgC-CGCCg -3'
miRNA:   3'- gaCGCCGCGaa------------UGCaaCGGgGuGUGG- -5'
6494 3' -56.5 NC_001847.1 + 67845 0.66 0.877977
Target:  5'- gCUGcCGGCGCUggcGCGcgGCUCgcgaCGCGCUg -3'
miRNA:   3'- -GAC-GCCGCGAa--UGCaaCGGG----GUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 131264 0.66 0.877977
Target:  5'- -cGCGGCGCcgcGCGacggGCCgC-CGCCg -3'
miRNA:   3'- gaCGCCGCGaa-UGCaa--CGGgGuGUGG- -5'
6494 3' -56.5 NC_001847.1 + 60444 0.66 0.877977
Target:  5'- -cGCGcGCGUcgGCGcUGCCCCcgucggGCGCg -3'
miRNA:   3'- gaCGC-CGCGaaUGCaACGGGG------UGUGg -5'
6494 3' -56.5 NC_001847.1 + 5186 0.66 0.877977
Target:  5'- -cGCGGCGCgggaGaaGCCCU-CGCCg -3'
miRNA:   3'- gaCGCCGCGaaugCaaCGGGGuGUGG- -5'
6494 3' -56.5 NC_001847.1 + 125288 0.66 0.877977
Target:  5'- uUGUaGGCGU--GCGUcGgUCCACACCa -3'
miRNA:   3'- gACG-CCGCGaaUGCAaCgGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 30148 0.66 0.877977
Target:  5'- -cGCGGCGCgc-CGUgcGCCCUgggugcgugGCGCUc -3'
miRNA:   3'- gaCGCCGCGaauGCAa-CGGGG---------UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 106720 0.66 0.877977
Target:  5'- -gGCGGCGUgcgccaggGCGcuaaGCCCCGC-CUg -3'
miRNA:   3'- gaCGCCGCGaa------UGCaa--CGGGGUGuGG- -5'
6494 3' -56.5 NC_001847.1 + 105785 0.66 0.877977
Target:  5'- -gGCGGCaGCgccgcCGggGCCgCGCGCUg -3'
miRNA:   3'- gaCGCCG-CGaau--GCaaCGGgGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 87276 0.66 0.877977
Target:  5'- -cGCGcGCGC-UGCGc-GCgCCCGCGCa -3'
miRNA:   3'- gaCGC-CGCGaAUGCaaCG-GGGUGUGg -5'
6494 3' -56.5 NC_001847.1 + 8966 0.66 0.877977
Target:  5'- -cGCGGuCGCcgcucaucUUGCGguugugGCCgCCGCGCUg -3'
miRNA:   3'- gaCGCC-GCG--------AAUGCaa----CGG-GGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 109899 0.66 0.877977
Target:  5'- gCUGUaccGGCaGCU--CGUUGUCCCcgcgACGCCg -3'
miRNA:   3'- -GACG---CCG-CGAauGCAACGGGG----UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 28451 0.66 0.877977
Target:  5'- -cGCGGCGCcgcGCGacggGCCgC-CGCCg -3'
miRNA:   3'- gaCGCCGCGaa-UGCaa--CGGgGuGUGG- -5'
6494 3' -56.5 NC_001847.1 + 107999 0.66 0.877977
Target:  5'- -cGCGGCGCgggaGaaGCCCU-CGCCg -3'
miRNA:   3'- gaCGCCGCGaaugCaaCGGGGuGUGG- -5'
6494 3' -56.5 NC_001847.1 + 34788 0.66 0.877977
Target:  5'- -cGCGGCGCgcggcUACGa---CCCGCgGCCg -3'
miRNA:   3'- gaCGCCGCGa----AUGCaacgGGGUG-UGG- -5'
6494 3' -56.5 NC_001847.1 + 21427 0.66 0.877977
Target:  5'- gCUG-GGCGCgUACGaguaccccGUCCCGCACg -3'
miRNA:   3'- -GACgCCGCGaAUGCaa------CGGGGUGUGg -5'
6494 3' -56.5 NC_001847.1 + 98479 0.66 0.877977
Target:  5'- -gGgGGCGCau-CGaaGCCCC-CACCu -3'
miRNA:   3'- gaCgCCGCGaauGCaaCGGGGuGUGG- -5'
6494 3' -56.5 NC_001847.1 + 45617 0.66 0.877259
Target:  5'- aUGCGGUcCUUgACGUUggggcggGCCUCGCugCg -3'
miRNA:   3'- gACGCCGcGAA-UGCAA-------CGGGGUGugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.