miRNA display CGI


Results 21 - 40 of 600 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 3' -56.5 NC_001847.1 + 122020 0.75 0.364179
Target:  5'- -gGCGGCGCg-GCGccGCCCgCGCGCCc -3'
miRNA:   3'- gaCGCCGCGaaUGCaaCGGG-GUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 2762 0.75 0.37228
Target:  5'- -gGCGGCGCcgGCGccggcGCCCC-CGCCg -3'
miRNA:   3'- gaCGCCGCGaaUGCaa---CGGGGuGUGG- -5'
6494 3' -56.5 NC_001847.1 + 51777 0.75 0.37228
Target:  5'- aUGCGGCGCcaGCuc-GCCCCGCGCg -3'
miRNA:   3'- gACGCCGCGaaUGcaaCGGGGUGUGg -5'
6494 3' -56.5 NC_001847.1 + 119886 0.75 0.37228
Target:  5'- gCUGCGGCGaucgcgUGCGUgGCCgCCGcCGCCg -3'
miRNA:   3'- -GACGCCGCga----AUGCAaCGG-GGU-GUGG- -5'
6494 3' -56.5 NC_001847.1 + 105575 0.75 0.37228
Target:  5'- -gGCGGCGCcgGCGccggcGCCCC-CGCCg -3'
miRNA:   3'- gaCGCCGCGaaUGCaa---CGGGGuGUGG- -5'
6494 3' -56.5 NC_001847.1 + 16005 0.75 0.378024
Target:  5'- -cGCGGCGCcgACGagcucgccaucgacgGCCCCAUGCCu -3'
miRNA:   3'- gaCGCCGCGaaUGCaa-------------CGGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 3313 0.75 0.388847
Target:  5'- -cGCGGCGCggGCGccgcUGCCgCCgGCGCCg -3'
miRNA:   3'- gaCGCCGCGaaUGCa---ACGG-GG-UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 106126 0.75 0.388847
Target:  5'- -cGCGGCGCggGCGccgcUGCCgCCgGCGCCg -3'
miRNA:   3'- gaCGCCGCGaaUGCa---ACGG-GG-UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 71926 0.75 0.40589
Target:  5'- -cGCGGCGCgcgcacGCGUaaacgGCgCCGCGCCg -3'
miRNA:   3'- gaCGCCGCGaa----UGCAa----CGgGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 65513 0.74 0.414586
Target:  5'- -gGCGGCGCgcgcagUGCGgccGCCcggCCGCGCCg -3'
miRNA:   3'- gaCGCCGCGa-----AUGCaa-CGG---GGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 6859 0.74 0.414586
Target:  5'- -gGCGGCGCUUGCuUUGgCCCGC-CUu -3'
miRNA:   3'- gaCGCCGCGAAUGcAACgGGGUGuGG- -5'
6494 3' -56.5 NC_001847.1 + 60956 0.74 0.414586
Target:  5'- uUGCaggaaGGCGCcgcGCGgcauggGCCCCACGCCg -3'
miRNA:   3'- gACG-----CCGCGaa-UGCaa----CGGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 19648 0.74 0.414586
Target:  5'- -cGCGGcCGCUUGCGg-GCCCgGcCGCCg -3'
miRNA:   3'- gaCGCC-GCGAAUGCaaCGGGgU-GUGG- -5'
6494 3' -56.5 NC_001847.1 + 49950 0.74 0.414586
Target:  5'- -cGUGGCGC--GCGgUGCCgCGCACCu -3'
miRNA:   3'- gaCGCCGCGaaUGCaACGGgGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 109672 0.74 0.414586
Target:  5'- -gGCGGCGCUUGCuUUGgCCCGC-CUu -3'
miRNA:   3'- gaCGCCGCGAAUGcAACgGGGUGuGG- -5'
6494 3' -56.5 NC_001847.1 + 133428 0.74 0.414586
Target:  5'- -cGCGGCGCggcgGCGgcugaucgUGCUCgACGCCg -3'
miRNA:   3'- gaCGCCGCGaa--UGCa-------ACGGGgUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 30615 0.74 0.414586
Target:  5'- -cGCGGCGCggcgGCGgcugaucgUGCUCgACGCCg -3'
miRNA:   3'- gaCGCCGCGaa--UGCa-------ACGGGgUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 47215 0.74 0.423396
Target:  5'- -cGCGuGCGCggccGCGcccaGCCCCACGCCc -3'
miRNA:   3'- gaCGC-CGCGaa--UGCaa--CGGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 35965 0.74 0.432316
Target:  5'- -gGCGGCGCUgcUGUgGCUCC-CGCCg -3'
miRNA:   3'- gaCGCCGCGAauGCAaCGGGGuGUGG- -5'
6494 3' -56.5 NC_001847.1 + 102259 0.74 0.432316
Target:  5'- -cGCGGCGCgcacCG-UGCCCUccaGCGCCa -3'
miRNA:   3'- gaCGCCGCGaau-GCaACGGGG---UGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.