miRNA display CGI


Results 1 - 20 of 600 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 3' -56.5 NC_001847.1 + 17215 1.12 0.001397
Target:  5'- uCUGCGGCGCUUACGUUGCCCCACACCg -3'
miRNA:   3'- -GACGCCGCGAAUGCAACGGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 16637 0.82 0.156677
Target:  5'- -cGCGGCgGCUUugccguCGggGCCCCGCGCCu -3'
miRNA:   3'- gaCGCCG-CGAAu-----GCaaCGGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 54593 0.81 0.169142
Target:  5'- -gGCGGCGCUgGCGgcgcGCgCCCGCGCCg -3'
miRNA:   3'- gaCGCCGCGAaUGCaa--CG-GGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 116611 0.79 0.228221
Target:  5'- uCUGCGGCGCggacgGCGgcGCgCCCGCAgCg -3'
miRNA:   3'- -GACGCCGCGaa---UGCaaCG-GGGUGUgG- -5'
6494 3' -56.5 NC_001847.1 + 33333 0.78 0.25149
Target:  5'- -gGCGGCGCgcUGCGUgacgguggGCCCCucGCACCu -3'
miRNA:   3'- gaCGCCGCGa-AUGCAa-------CGGGG--UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 56833 0.78 0.263841
Target:  5'- -cGCGGCGCgcGCGccGCgCCGCGCCg -3'
miRNA:   3'- gaCGCCGCGaaUGCaaCGgGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 104531 0.78 0.270199
Target:  5'- uUGCGGCGCUgcGCGgcgGCCCCgGgGCCg -3'
miRNA:   3'- gACGCCGCGAa-UGCaa-CGGGG-UgUGG- -5'
6494 3' -56.5 NC_001847.1 + 115817 0.78 0.276679
Target:  5'- -cGCGGCGCUUGCGUUaacaGCCacggCCGCgGCCg -3'
miRNA:   3'- gaCGCCGCGAAUGCAA----CGG----GGUG-UGG- -5'
6494 3' -56.5 NC_001847.1 + 105690 0.77 0.290012
Target:  5'- -gGCGGCGCUUcggccGCGggcgGCgCCACGCCc -3'
miRNA:   3'- gaCGCCGCGAA-----UGCaa--CGgGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 117269 0.76 0.318175
Target:  5'- uCUGCGGgGCcgccguUUugGggcGCCCCGCGCCc -3'
miRNA:   3'- -GACGCCgCG------AAugCaa-CGGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 61270 0.76 0.318175
Target:  5'- -cGCGGCGCgcGCGg-GCgCCGCGCCg -3'
miRNA:   3'- gaCGCCGCGaaUGCaaCGgGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 47734 0.76 0.318175
Target:  5'- -cGCGGCGg--GCGggGCCCCGC-CCg -3'
miRNA:   3'- gaCGCCGCgaaUGCaaCGGGGUGuGG- -5'
6494 3' -56.5 NC_001847.1 + 99505 0.76 0.318175
Target:  5'- -gGCGGCGCgguccaGCGcugGCCCCAgCGCCg -3'
miRNA:   3'- gaCGCCGCGaa----UGCaa-CGGGGU-GUGG- -5'
6494 3' -56.5 NC_001847.1 + 87405 0.76 0.340615
Target:  5'- uUGC-GCGCggGCGggGCCCCGCccGCCg -3'
miRNA:   3'- gACGcCGCGaaUGCaaCGGGGUG--UGG- -5'
6494 3' -56.5 NC_001847.1 + 69632 0.76 0.340615
Target:  5'- -gGCGGCcgcacuGCgcGCGccGCCCCACACCg -3'
miRNA:   3'- gaCGCCG------CGaaUGCaaCGGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 36880 0.76 0.348346
Target:  5'- -cGCGGgGCUgcuggcgacUACGcUGCCCCGcCGCCa -3'
miRNA:   3'- gaCGCCgCGA---------AUGCaACGGGGU-GUGG- -5'
6494 3' -56.5 NC_001847.1 + 25935 0.76 0.348346
Target:  5'- -cGcCGGCGCUUG-GUUGCCCgauCGCACCc -3'
miRNA:   3'- gaC-GCCGCGAAUgCAACGGG---GUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 90194 0.76 0.348346
Target:  5'- gCUGCGGCGCgc-CGUcGCCCagcccgaGCGCCc -3'
miRNA:   3'- -GACGCCGCGaauGCAaCGGGg------UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 45527 0.76 0.356201
Target:  5'- -gGCGGCGCggACGggGCCgugCCGCGCa -3'
miRNA:   3'- gaCGCCGCGaaUGCaaCGG---GGUGUGg -5'
6494 3' -56.5 NC_001847.1 + 80646 0.75 0.364179
Target:  5'- -gGCGGCGCUcGCGggaGaCCCgGCGCCg -3'
miRNA:   3'- gaCGCCGCGAaUGCaa-C-GGGgUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.