miRNA display CGI


Results 1 - 20 of 600 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 3' -56.5 NC_001847.1 + 106 0.66 0.863207
Target:  5'- cCUGggucCGGCGCcccGCGccccgGCCCCGC-CCg -3'
miRNA:   3'- -GAC----GCCGCGaa-UGCaa---CGGGGUGuGG- -5'
6494 3' -56.5 NC_001847.1 + 291 0.66 0.863207
Target:  5'- -aGCccGCGCggGCGccGuCCCCGCGCCc -3'
miRNA:   3'- gaCGc-CGCGaaUGCaaC-GGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 486 0.7 0.628318
Target:  5'- -aGCGGCGgcgGCGgggcgGCCgCGCGCCa -3'
miRNA:   3'- gaCGCCGCgaaUGCaa---CGGgGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 619 0.7 0.679546
Target:  5'- -aGCGGCGC--GCGg---CCCGCGCCu -3'
miRNA:   3'- gaCGCCGCGaaUGCaacgGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 1066 0.67 0.796283
Target:  5'- -gGCGGCGCcggGCuGUucgcUGCUCCcCGCCu -3'
miRNA:   3'- gaCGCCGCGaa-UG-CA----ACGGGGuGUGG- -5'
6494 3' -56.5 NC_001847.1 + 1101 0.71 0.597549
Target:  5'- -cGCGGcCGCggGCGgcGCCgCCGCgGCCu -3'
miRNA:   3'- gaCGCC-GCGaaUGCaaCGG-GGUG-UGG- -5'
6494 3' -56.5 NC_001847.1 + 1287 0.66 0.870699
Target:  5'- -gGCGGCGCggugGCug-GCCgCCuCGCCc -3'
miRNA:   3'- gaCGCCGCGaa--UGcaaCGG-GGuGUGG- -5'
6494 3' -56.5 NC_001847.1 + 1459 0.67 0.814075
Target:  5'- gUGUaGCGC--ACGUUGCCgCCGCGgCa -3'
miRNA:   3'- gACGcCGCGaaUGCAACGG-GGUGUgG- -5'
6494 3' -56.5 NC_001847.1 + 1529 0.66 0.855504
Target:  5'- cCU-CGGCGCgcGCGaagGCgCCCGgGCCg -3'
miRNA:   3'- -GAcGCCGCGaaUGCaa-CG-GGGUgUGG- -5'
6494 3' -56.5 NC_001847.1 + 1638 0.7 0.648858
Target:  5'- -cGCGGCGCgcagguacacgUGCGccUGCCCgACgGCCg -3'
miRNA:   3'- gaCGCCGCGa----------AUGCa-ACGGGgUG-UGG- -5'
6494 3' -56.5 NC_001847.1 + 1871 0.67 0.822725
Target:  5'- -aGuCGGCGCUcaGCagcagccgGUUGCCCaGCGCCg -3'
miRNA:   3'- gaC-GCCGCGAa-UG--------CAACGGGgUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 2082 0.66 0.855504
Target:  5'- -gGCGaGCGCcccGCGggGCCCgCGCGgCg -3'
miRNA:   3'- gaCGC-CGCGaa-UGCaaCGGG-GUGUgG- -5'
6494 3' -56.5 NC_001847.1 + 2234 0.67 0.831201
Target:  5'- -cGCGGCGCUgggcgcggGCGUgugguaGuCCCCGgGCg -3'
miRNA:   3'- gaCGCCGCGAa-------UGCAa-----C-GGGGUgUGg -5'
6494 3' -56.5 NC_001847.1 + 2264 0.69 0.699822
Target:  5'- -cGCGGCgGCccucgggaACGaaUUGCUCCGCGCCa -3'
miRNA:   3'- gaCGCCG-CGaa------UGC--AACGGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 2420 0.66 0.847597
Target:  5'- gCUGCGcCGCUU-CGgccaaGCUUCGCGCCa -3'
miRNA:   3'- -GACGCcGCGAAuGCaa---CGGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 2471 0.68 0.758981
Target:  5'- -aGCGG-GCg-GCGgcGCCCC-CGCCg -3'
miRNA:   3'- gaCGCCgCGaaUGCaaCGGGGuGUGG- -5'
6494 3' -56.5 NC_001847.1 + 2575 0.7 0.648858
Target:  5'- -cGCgGGCGCcUGCGcgGCCgCCGCgGCCg -3'
miRNA:   3'- gaCG-CCGCGaAUGCaaCGG-GGUG-UGG- -5'
6494 3' -56.5 NC_001847.1 + 2710 0.7 0.669344
Target:  5'- -aGCuuGCGCUUGCGaaccUGCCCCACcACg -3'
miRNA:   3'- gaCGc-CGCGAAUGCa---ACGGGGUG-UGg -5'
6494 3' -56.5 NC_001847.1 + 2762 0.75 0.37228
Target:  5'- -gGCGGCGCcgGCGccggcGCCCC-CGCCg -3'
miRNA:   3'- gaCGCCGCGaaUGCaa---CGGGGuGUGG- -5'
6494 3' -56.5 NC_001847.1 + 3157 0.69 0.709879
Target:  5'- -gGCGGCGCg-GCGggccGCCuCCAgCGCCu -3'
miRNA:   3'- gaCGCCGCGaaUGCaa--CGG-GGU-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.