miRNA display CGI


Results 1 - 20 of 600 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 3' -56.5 NC_001847.1 + 134777 0.7 0.628318
Target:  5'- -cGCGGCGCgcgggGCGg-GCCCCgggGCGCg -3'
miRNA:   3'- gaCGCCGCGaa---UGCaaCGGGG---UGUGg -5'
6494 3' -56.5 NC_001847.1 + 134653 0.67 0.831201
Target:  5'- --uUGGCGC--GCGgccGCCCCGcCGCCg -3'
miRNA:   3'- gacGCCGCGaaUGCaa-CGGGGU-GUGG- -5'
6494 3' -56.5 NC_001847.1 + 134589 0.74 0.450481
Target:  5'- -cGCGGCGCUgGCGUccGCCgCCACGuuccCCg -3'
miRNA:   3'- gaCGCCGCGAaUGCAa-CGG-GGUGU----GG- -5'
6494 3' -56.5 NC_001847.1 + 134120 0.69 0.736674
Target:  5'- gCUGCGGCGCgccgcggGCGgcgGCCugguggagcgcgugCCGcCGCCg -3'
miRNA:   3'- -GACGCCGCGaa-----UGCaa-CGG--------------GGU-GUGG- -5'
6494 3' -56.5 NC_001847.1 + 134045 0.66 0.855504
Target:  5'- -gGCGGCGCcgccCGcgGCCgCgGCGCCc -3'
miRNA:   3'- gaCGCCGCGaau-GCaaCGG-GgUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 133984 0.71 0.597549
Target:  5'- uCUGCGcggccGCGCUgcCGgaGCCgCGCGCCg -3'
miRNA:   3'- -GACGC-----CGCGAauGCaaCGGgGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 133736 0.67 0.831201
Target:  5'- -cGCGGUGCc--CG-UGCCgCCGCGCg -3'
miRNA:   3'- gaCGCCGCGaauGCaACGG-GGUGUGg -5'
6494 3' -56.5 NC_001847.1 + 133598 0.66 0.852365
Target:  5'- -cGCGGCGCgucuucgGCCCgGgCGCCu -3'
miRNA:   3'- gaCGCCGCGaaugcaaCGGGgU-GUGG- -5'
6494 3' -56.5 NC_001847.1 + 133527 0.71 0.60779
Target:  5'- -cGCGGUGCUgccGCGgcgcagUGCgCCGCGCg -3'
miRNA:   3'- gaCGCCGCGAa--UGCa-----ACGgGGUGUGg -5'
6494 3' -56.5 NC_001847.1 + 133428 0.74 0.414586
Target:  5'- -cGCGGCGCggcgGCGgcugaucgUGCUCgACGCCg -3'
miRNA:   3'- gaCGCCGCGaa--UGCa-------ACGGGgUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 133178 0.66 0.880826
Target:  5'- cCUGCgcgGGCGCggGC--UGCCCUcgcuggaggagcucuGCGCCg -3'
miRNA:   3'- -GACG---CCGCGaaUGcaACGGGG---------------UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 133167 0.66 0.862446
Target:  5'- gCUGCccggggaGGCGCUgGCGgcGCCgCCcggcgaggacgaGCGCCg -3'
miRNA:   3'- -GACG-------CCGCGAaUGCaaCGG-GG------------UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 132930 0.67 0.805258
Target:  5'- -cGCGGCGCUgGCGgccuacugccGCCCCGagguCGCg -3'
miRNA:   3'- gaCGCCGCGAaUGCaa--------CGGGGU----GUGg -5'
6494 3' -56.5 NC_001847.1 + 132569 0.71 0.597549
Target:  5'- -cGCGGCGgccGCGcagGCgCCCGCGCCg -3'
miRNA:   3'- gaCGCCGCgaaUGCaa-CG-GGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 132383 0.7 0.669344
Target:  5'- -gGgGGCGCcgGCGccggcGCCgCCGCGCCg -3'
miRNA:   3'- gaCgCCGCGaaUGCaa---CGG-GGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 132229 0.72 0.556913
Target:  5'- -gGCGGCGCggacCGUgGCCCCGC-UCg -3'
miRNA:   3'- gaCGCCGCGaau-GCAaCGGGGUGuGG- -5'
6494 3' -56.5 NC_001847.1 + 132181 0.72 0.556913
Target:  5'- -gGCGGCGCUgcGCGccgaggcgGCCgCCGCGCUg -3'
miRNA:   3'- gaCGCCGCGAa-UGCaa------CGG-GGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 132103 0.68 0.758981
Target:  5'- cCUGCGGCuGCUgggcgcgcagACGUgaccGCCCCuauugggcgGCGCUg -3'
miRNA:   3'- -GACGCCG-CGAa---------UGCAa---CGGGG---------UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 132088 0.71 0.577153
Target:  5'- -gGCGGCGCacccggaGCGcgUGCUCCGgGCCg -3'
miRNA:   3'- gaCGCCGCGaa-----UGCa-ACGGGGUgUGG- -5'
6494 3' -56.5 NC_001847.1 + 131973 0.69 0.699822
Target:  5'- cCUGCcgcgaGGCGCUggagGCGgc-CCgCCGCGCCg -3'
miRNA:   3'- -GACG-----CCGCGAa---UGCaacGG-GGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.